Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL023806.1-201ENST00000603994 1649 ntBASIC21■□□□□ 0.95
COL5A3P25940 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL5A3P25940 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL5A3P25940 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC21■□□□□ 0.95
COL5A3P25940 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
COL5A3P25940 FTH1-202ENST00000526640 786 ntTSL 2 BASIC21■□□□□ 0.95
COL5A3P25940 AC106886.1-201ENST00000568660 600 ntBASIC21■□□□□ 0.95
COL5A3P25940 AL606495.2-201ENST00000605867 535 ntBASIC21■□□□□ 0.95
COL5A3P25940 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL5A3P25940 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC21■□□□□ 0.95
COL5A3P25940 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21■□□□□ 0.95
COL5A3P25940 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL5A3P25940 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL5A3P25940 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC21■□□□□ 0.95
COL5A3P25940 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.99■□□□□ 0.95
COL5A3P25940 LINC02012-201ENST00000608206 1725 ntBASIC20.99■□□□□ 0.95
COL5A3P25940 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC20.99■□□□□ 0.95
COL5A3P25940 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL5A3P25940 RPS2P32-201ENST00000439199 892 ntBASIC20.99■□□□□ 0.95
COL5A3P25940 AC098859.1-201ENST00000502915 1238 ntBASIC20.99■□□□□ 0.95
COL5A3P25940 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.99■□□□□ 0.95
COL5A3P25940 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.99■□□□□ 0.95
COL5A3P25940 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC20.99■□□□□ 0.95
COL5A3P25940 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.99■□□□□ 0.95
COL5A3P25940 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.99■□□□□ 0.95
COL5A3P25940 MIR6805-201ENST00000615055 62 ntBASIC20.99■□□□□ 0.95
COL5A3P25940 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.99■□□□□ 0.95
COL5A3P25940 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.99■□□□□ 0.95
COL5A3P25940 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.99■□□□□ 0.95
COL5A3P25940 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A3P25940 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.98■□□□□ 0.95
COL5A3P25940 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 VMO1-203ENST00000416307 712 ntTSL 2 BASIC20.98■□□□□ 0.95
COL5A3P25940 AC098850.1-201ENST00000419919 790 ntBASIC20.98■□□□□ 0.95
COL5A3P25940 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.98■□□□□ 0.95
COL5A3P25940 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.98■□□□□ 0.95
COL5A3P25940 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.98■□□□□ 0.95
COL5A3P25940 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.98■□□□□ 0.95
COL5A3P25940 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20.98■□□□□ 0.95
COL5A3P25940 SRD5A3P1-201ENST00000603021 949 ntBASIC20.98■□□□□ 0.95
COL5A3P25940 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 AL033527.4-201ENST00000641026 673 ntBASIC20.98■□□□□ 0.95
COL5A3P25940 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
COL5A3P25940 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.98■□□□□ 0.95
COL5A3P25940 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.98■□□□□ 0.95
COL5A3P25940 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
COL5A3P25940 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC20.98■□□□□ 0.95
COL5A3P25940 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
COL5A3P25940 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.98■□□□□ 0.95
COL5A3P25940 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.98■□□□□ 0.95
COL5A3P25940 AL589987.1-201ENST00000453380 819 ntBASIC20.98■□□□□ 0.95
COL5A3P25940 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.98■□□□□ 0.95
COL5A3P25940 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.98■□□□□ 0.95
COL5A3P25940 AC008735.3-201ENST00000596646 500 ntBASIC20.98■□□□□ 0.95
COL5A3P25940 AC006277.1-201ENST00000624348 1610 ntBASIC20.98■□□□□ 0.95
COL5A3P25940 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A3P25940 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.97■□□□□ 0.95
COL5A3P25940 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.97■□□□□ 0.95
COL5A3P25940 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
COL5A3P25940 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
COL5A3P25940 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
COL5A3P25940 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
COL5A3P25940 AC024267.1-201ENST00000582320 895 ntBASIC20.97■□□□□ 0.95
COL5A3P25940 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.97■□□□□ 0.95
COL5A3P25940 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC20.97■□□□□ 0.95
COL5A3P25940 AL162274.1-201ENST00000617191 1098 ntBASIC20.97■□□□□ 0.95
COL5A3P25940 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.97■□□□□ 0.95
COL5A3P25940 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A3P25940 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms