Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.29■□□□□ 0.36
VCANP13611 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 AL035456.1-201ENST00000456064 1369 ntBASIC17.29■□□□□ 0.36
VCANP13611 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.29■□□□□ 0.36
VCANP13611 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.29■□□□□ 0.36
VCANP13611 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.29■□□□□ 0.36
VCANP13611 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.29■□□□□ 0.36
VCANP13611 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.29■□□□□ 0.36
VCANP13611 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 REXO1L11P-201ENST00000620964 1927 ntBASIC17.29■□□□□ 0.36
VCANP13611 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
VCANP13611 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.29■□□□□ 0.36
VCANP13611 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.29■□□□□ 0.36
VCANP13611 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC17.29■□□□□ 0.36
VCANP13611 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.29■□□□□ 0.36
VCANP13611 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.29■□□□□ 0.36
VCANP13611 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
VCANP13611 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
VCANP13611 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.28■□□□□ 0.36
VCANP13611 SRD5A3P1-201ENST00000603021 949 ntBASIC17.28■□□□□ 0.36
VCANP13611 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.28■□□□□ 0.36
VCANP13611 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.28■□□□□ 0.36
VCANP13611 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VCANP13611 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC17.28■□□□□ 0.36
VCANP13611 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.28■□□□□ 0.36
VCANP13611 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.28■□□□□ 0.36
VCANP13611 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC17.28■□□□□ 0.36
VCANP13611 AC105233.2-201ENST00000523697 349 ntBASIC17.28■□□□□ 0.36
VCANP13611 AF228730.5-201ENST00000530288 346 ntBASIC17.28■□□□□ 0.36
VCANP13611 MIR3619-201ENST00000579667 83 ntBASIC17.28■□□□□ 0.36
VCANP13611 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
VCANP13611 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
VCANP13611 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.28■□□□□ 0.36
VCANP13611 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.28■□□□□ 0.36
VCANP13611 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC17.28■□□□□ 0.36
VCANP13611 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.28■□□□□ 0.36
VCANP13611 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCANP13611 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.27■□□□□ 0.36
VCANP13611 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
VCANP13611 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.36
VCANP13611 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VCANP13611 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VCANP13611 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.27■□□□□ 0.36
VCANP13611 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VCANP13611 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.27■□□□□ 0.36
VCANP13611 KRT18P34-201ENST00000488218 1270 ntBASIC17.27■□□□□ 0.36
VCANP13611 RN7SL560P-201ENST00000577943 264 ntBASIC17.27■□□□□ 0.36
VCANP13611 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.27■□□□□ 0.36
VCANP13611 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.27■□□□□ 0.36
VCANP13611 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VCANP13611 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.27■□□□□ 0.36
VCANP13611 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VCANP13611 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VCANP13611 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.27■□□□□ 0.35
VCANP13611 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.27■□□□□ 0.35
VCANP13611 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
VCANP13611 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
VCANP13611 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VCANP13611 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VCANP13611 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VCANP13611 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VCANP13611 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.27■□□□□ 0.35
VCANP13611 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.27■□□□□ 0.35
VCANP13611 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 AC026954.1-201ENST00000429771 1293 ntBASIC17.26■□□□□ 0.35
VCANP13611 MTND6P24-201ENST00000440466 518 ntBASIC17.26■□□□□ 0.35
VCANP13611 EIF4HP1-201ENST00000453115 687 ntBASIC17.26■□□□□ 0.35
VCANP13611 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.26■□□□□ 0.35
VCANP13611 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.26■□□□□ 0.35
VCANP13611 AP000812.2-201ENST00000538934 718 ntBASIC17.26■□□□□ 0.35
VCANP13611 RN7SL555P-201ENST00000584742 339 ntBASIC17.26■□□□□ 0.35
VCANP13611 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.26■□□□□ 0.35
VCANP13611 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.26■□□□□ 0.35
VCANP13611 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.26■□□□□ 0.35
VCANP13611 CETN4P-206ENST00000642099 2168 ntBASIC17.26■□□□□ 0.35
VCANP13611 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.26■□□□□ 0.35
VCANP13611 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.26■□□□□ 0.35
VCANP13611 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCANP13611 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.26■□□□□ 0.35
VCANP13611 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.26■□□□□ 0.35
VCANP13611 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms