Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 AL009178.2-201ENST00000597278 2719 ntBASIC12.8□□□□□ -0.36
HLA-DQA1P01909 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 BAALC-201ENST00000297574 801 ntTSL 3 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 KSR1P1-201ENST00000446298 240 ntBASIC12.8□□□□□ -0.36
HLA-DQA1P01909 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 AF186192.3-201ENST00000583427 947 ntBASIC12.8□□□□□ -0.36
HLA-DQA1P01909 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 TMEM191A-211ENST00000637163 1067 ntBASIC12.8□□□□□ -0.36
HLA-DQA1P01909 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 ALOX12P2-203ENST00000570921 1945 ntBASIC12.8□□□□□ -0.36
HLA-DQA1P01909 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
HLA-DQA1P01909 ME2P1-201ENST00000426028 1970 ntBASIC12.8□□□□□ -0.36
HLA-DQA1P01909 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 AL391256.1-201ENST00000443260 1855 ntBASIC12.79□□□□□ -0.36
HLA-DQA1P01909 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 RPS2P4-201ENST00000476944 856 ntBASIC12.79□□□□□ -0.36
HLA-DQA1P01909 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 FDX2-207ENST00000494368 584 ntTSL 4 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DQA1P01909 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms