Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.95■□□□□ 0.62
MSH4O15457 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.95■□□□□ 0.62
MSH4O15457 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
MSH4O15457 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.95■□□□□ 0.62
MSH4O15457 RNU1-129P-201ENST00000384064 167 ntBASIC18.95■□□□□ 0.62
MSH4O15457 MIR1233-2-201ENST00000408138 82 ntBASIC18.95■□□□□ 0.62
MSH4O15457 MIR1233-1-201ENST00000408722 82 ntBASIC18.95■□□□□ 0.62
MSH4O15457 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.95■□□□□ 0.62
MSH4O15457 MKNK2P1-201ENST00000437526 628 ntBASIC18.95■□□□□ 0.62
MSH4O15457 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.95■□□□□ 0.62
MSH4O15457 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.95■□□□□ 0.62
MSH4O15457 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.95■□□□□ 0.62
MSH4O15457 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
MSH4O15457 U1.21-201ENST00000580816 167 ntBASIC18.95■□□□□ 0.62
MSH4O15457 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.95■□□□□ 0.62
MSH4O15457 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
MSH4O15457 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.95■□□□□ 0.62
MSH4O15457 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.95■□□□□ 0.62
MSH4O15457 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 AC090340.1-201ENST00000620778 4980 ntBASIC18.94■□□□□ 0.62
MSH4O15457 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
MSH4O15457 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
MSH4O15457 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.94■□□□□ 0.62
MSH4O15457 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
MSH4O15457 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
MSH4O15457 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.94■□□□□ 0.62
MSH4O15457 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 MIR4469-201ENST00000583919 79 ntBASIC18.94■□□□□ 0.62
MSH4O15457 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.94■□□□□ 0.62
MSH4O15457 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.94■□□□□ 0.62
MSH4O15457 AC099522.2-201ENST00000607001 744 ntBASIC18.94■□□□□ 0.62
MSH4O15457 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.94■□□□□ 0.62
MSH4O15457 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 RNF216P1-203ENST00000404404 2427 ntBASIC18.94■□□□□ 0.62
MSH4O15457 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH4O15457 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
MSH4O15457 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.93■□□□□ 0.62
MSH4O15457 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
MSH4O15457 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
MSH4O15457 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
MSH4O15457 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.93■□□□□ 0.62
MSH4O15457 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.93■□□□□ 0.62
MSH4O15457 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 AC112191.1-201ENST00000523689 701 ntBASIC18.93■□□□□ 0.62
MSH4O15457 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
MSH4O15457 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.93■□□□□ 0.62
MSH4O15457 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.93■□□□□ 0.62
MSH4O15457 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.93■□□□□ 0.62
MSH4O15457 AL009183.1-201ENST00000603760 355 ntBASIC18.93■□□□□ 0.62
MSH4O15457 AL031055.1-201ENST00000606362 631 ntBASIC18.93■□□□□ 0.62
MSH4O15457 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.93■□□□□ 0.62
MSH4O15457 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
MSH4O15457 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MSH4O15457 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms