Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USP29Q9HBJ7 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
USP29Q9HBJ7 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.5■□□□□ 0.39
USP29Q9HBJ7 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 AL603756.1-201ENST00000606511 2163 ntBASIC17.49■□□□□ 0.39
USP29Q9HBJ7 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 CICP6-201ENST00000457191 2729 ntBASIC17.49■□□□□ 0.39
USP29Q9HBJ7 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
USP29Q9HBJ7 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 SLC25A1P1-201ENST00000528351 927 ntBASIC17.48■□□□□ 0.39
USP29Q9HBJ7 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 MIR7706-201ENST00000613747 67 ntBASIC17.48■□□□□ 0.39
USP29Q9HBJ7 AL022326.1-202ENST00000641533 845 ntBASIC17.48■□□□□ 0.39
USP29Q9HBJ7 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 AC243591.1-201ENST00000452967 1364 ntBASIC17.48■□□□□ 0.39
USP29Q9HBJ7 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP29Q9HBJ7 PMS2P7-201ENST00000506558 1336 ntBASIC17.47■□□□□ 0.39
USP29Q9HBJ7 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 RPL13AP23-201ENST00000480739 586 ntBASIC17.47■□□□□ 0.39
USP29Q9HBJ7 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 TERC-201ENST00000602385 541 ntBASIC17.47■□□□□ 0.39
USP29Q9HBJ7 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 AC139530.3-201ENST00000620344 690 ntBASIC17.47■□□□□ 0.39
USP29Q9HBJ7 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 AL162727.3-201ENST00000635661 2787 ntBASIC17.47■□□□□ 0.39
USP29Q9HBJ7 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP29Q9HBJ7 AL356309.3-201ENST00000624132 1934 ntBASIC17.47■□□□□ 0.39
USP29Q9HBJ7 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms