Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 AL671710.1-201ENST00000610245 2349 ntBASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 AC005332.8-201ENST00000622750 2735 ntBASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 AC005498.2-205ENST00000593218 784 ntBASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
PAAF1Q9BRP4 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 UXT-AS1-201ENST00000590504 1525 ntBASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 PMS2P4-201ENST00000412466 1052 ntBASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 RBPMS2P1-201ENST00000437762 623 ntBASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 DUX4L27-201ENST00000554796 1261 ntBASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 AL138918.1-201ENST00000568306 659 ntBASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 AL390955.2-201ENST00000603032 514 ntBASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.98■□□□□ 0.47
PAAF1Q9BRP4 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 PCDHB17P-201ENST00000539533 2393 ntBASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 IGHV3-62-201ENST00000520057 340 ntBASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 AC124947.2-201ENST00000547118 1133 ntBASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.97■□□□□ 0.47
PAAF1Q9BRP4 MIR3909-201ENST00000579518 119 ntBASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms