Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 PTCHD3P3-201ENST00000403073 906 ntBASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AC023274.1-201ENST00000418278 595 ntBASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AC002347.1-201ENST00000569543 541 ntBASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AC010327.4-202ENST00000591484 748 ntBASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AC004790.2-201ENST00000623588 572 ntBASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AC046185.3-201ENST00000623228 1824 ntBASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AL355312.1-201ENST00000407115 2176 ntBASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
CLIP3Q96DZ5 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 DNAJB3-201ENST00000446806 729 ntBASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 IGHV3-65-201ENST00000523210 341 ntBASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 AL353135.1-201ENST00000606729 504 ntBASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 LINC01451-201ENST00000623792 534 ntBASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 AL805961.1-202ENST00000641562 540 ntBASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 FLJ38576-201ENST00000623820 2459 ntBASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP3Q96DZ5 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 YBX2P1-201ENST00000394192 760 ntBASIC16.42■□□□□ 0.22
CLIP3Q96DZ5 MRPL20P1-201ENST00000400819 433 ntBASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms