Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 AC012313.1-201ENST00000593393 3059 ntBASIC13.96□□□□□ -0.17
VPS13CQ709C8 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 BCYRN1-201ENST00000418539 200 ntBASIC13.96□□□□□ -0.17
VPS13CQ709C8 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 RARRES2P9-201ENST00000565168 469 ntBASIC13.96□□□□□ -0.17
VPS13CQ709C8 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VPS13CQ709C8 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.96□□□□□ -0.17
VPS13CQ709C8 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13CQ709C8 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13CQ709C8 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 AP006294.1-201ENST00000415407 339 ntBASIC13.96□□□□□ -0.18
VPS13CQ709C8 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13CQ709C8 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.96□□□□□ -0.18
VPS13CQ709C8 REXO1L6P-201ENST00000603433 1515 ntBASIC13.96□□□□□ -0.18
VPS13CQ709C8 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VPS13CQ709C8 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 AC135586.1-201ENST00000539323 574 ntBASIC13.95□□□□□ -0.18
VPS13CQ709C8 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 AC073389.1-201ENST00000595595 795 ntBASIC13.95□□□□□ -0.18
VPS13CQ709C8 MIR6775-201ENST00000617557 69 ntBASIC13.95□□□□□ -0.18
VPS13CQ709C8 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 EML3-217ENST00000531557 2509 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 DFFBP1-201ENST00000433250 979 ntBASIC13.95□□□□□ -0.18
VPS13CQ709C8 AC084346.2-201ENST00000607097 949 ntBASIC13.95□□□□□ -0.18
VPS13CQ709C8 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
VPS13CQ709C8 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS13CQ709C8 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 AL355994.2-201ENST00000447882 704 ntBASIC13.94□□□□□ -0.18
VPS13CQ709C8 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 AL080243.2-201ENST00000418783 582 ntBASIC13.94□□□□□ -0.18
VPS13CQ709C8 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS13CQ709C8 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS13CQ709C8 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms