Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 LINC01711-201ENST00000598340 967 ntBASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 AL139424.1-201ENST00000607572 797 ntBASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 FLJ38576-201ENST00000623820 2459 ntBASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.28■□□□□ 0.04
NHLRC1Q6VVB1 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 SCARNA2-201ENST00000458748 420 ntBASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 AC139887.3-201ENST00000568585 713 ntBASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 AC104692.2-201ENST00000603054 253 ntBASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 TP73-AS1-207ENST00000624167 988 ntBASIC15.27■□□□□ 0.04
NHLRC1Q6VVB1 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.27■□□□□ 0.03
NHLRC1Q6VVB1 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 AGGF1P2-201ENST00000426656 2106 ntBASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 TERC-201ENST00000602385 541 ntBASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 AL121912.1-201ENST00000603683 238 ntBASIC15.26■□□□□ 0.03
NHLRC1Q6VVB1 AC107918.4-202ENST00000641623 219 ntBASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms