Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIM2P55344 PCDHB19P-201ENST00000570871 2371 ntBASIC16.11■□□□□ 0.17
LIM2P55344 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIM2P55344 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIM2P55344 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIM2P55344 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.11■□□□□ 0.17
LIM2P55344 AC087163.2-201ENST00000457299 853 ntBASIC16.11■□□□□ 0.17
LIM2P55344 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.11■□□□□ 0.17
LIM2P55344 DUX4L17-201ENST00000557360 1267 ntBASIC16.11■□□□□ 0.17
LIM2P55344 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.11■□□□□ 0.17
LIM2P55344 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.11■□□□□ 0.17
LIM2P55344 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIM2P55344 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIM2P55344 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIM2P55344 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIM2P55344 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
LIM2P55344 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.11■□□□□ 0.17
LIM2P55344 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIM2P55344 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIM2P55344 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.11■□□□□ 0.17
LIM2P55344 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.11■□□□□ 0.17
LIM2P55344 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
LIM2P55344 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.11■□□□□ 0.17
LIM2P55344 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LIM2P55344 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.1■□□□□ 0.17
LIM2P55344 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.1■□□□□ 0.17
LIM2P55344 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LIM2P55344 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.1■□□□□ 0.17
LIM2P55344 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.1■□□□□ 0.17
LIM2P55344 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.1■□□□□ 0.17
LIM2P55344 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 RNA5SP415-201ENST00000517246 115 ntBASIC16.1■□□□□ 0.17
LIM2P55344 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 UNC93B6-202ENST00000528242 690 ntBASIC16.1■□□□□ 0.17
LIM2P55344 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.1■□□□□ 0.17
LIM2P55344 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.1■□□□□ 0.17
LIM2P55344 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.1■□□□□ 0.17
LIM2P55344 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
LIM2P55344 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LIM2P55344 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.1■□□□□ 0.17
LIM2P55344 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIM2P55344 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIM2P55344 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LIM2P55344 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LIM2P55344 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
LIM2P55344 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.09■□□□□ 0.17
LIM2P55344 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
LIM2P55344 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIM2P55344 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
LIM2P55344 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
LIM2P55344 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIM2P55344 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
LIM2P55344 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.09■□□□□ 0.17
LIM2P55344 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIM2P55344 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIM2P55344 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
LIM2P55344 AC108073.2-201ENST00000464002 357 ntBASIC16.09■□□□□ 0.17
LIM2P55344 SLC25A6P2-201ENST00000497974 877 ntBASIC16.09■□□□□ 0.17
LIM2P55344 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.09■□□□□ 0.17
LIM2P55344 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.09■□□□□ 0.17
LIM2P55344 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.09■□□□□ 0.17
LIM2P55344 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.09■□□□□ 0.17
LIM2P55344 AC004790.2-201ENST00000623588 572 ntBASIC16.09■□□□□ 0.17
LIM2P55344 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.09■□□□□ 0.17
LIM2P55344 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.09■□□□□ 0.17
LIM2P55344 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.09■□□□□ 0.17
LIM2P55344 IL9RP2-201ENST00000423948 1312 ntBASIC16.09■□□□□ 0.17
LIM2P55344 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
LIM2P55344 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIM2P55344 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIM2P55344 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
LIM2P55344 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.09■□□□□ 0.17
LIM2P55344 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms