Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.67■□□□□ 0.42
CDH6P55285 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
CDH6P55285 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CDH6P55285 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH6P55285 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.67■□□□□ 0.42
CDH6P55285 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH6P55285 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.66■□□□□ 0.42
CDH6P55285 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CDH6P55285 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CDH6P55285 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CDH6P55285 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH6P55285 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH6P55285 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.66■□□□□ 0.42
CDH6P55285 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.66■□□□□ 0.42
CDH6P55285 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.66■□□□□ 0.42
CDH6P55285 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH6P55285 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.66■□□□□ 0.42
CDH6P55285 AP002490.2-201ENST00000524791 560 ntBASIC17.66■□□□□ 0.42
CDH6P55285 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.66■□□□□ 0.42
CDH6P55285 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.66■□□□□ 0.42
CDH6P55285 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.66■□□□□ 0.42
CDH6P55285 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH6P55285 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH6P55285 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH6P55285 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH6P55285 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH6P55285 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 AC004870.1-201ENST00000315132 882 ntBASIC17.65■□□□□ 0.42
CDH6P55285 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 LAGE3P1-201ENST00000425356 484 ntBASIC17.65■□□□□ 0.42
CDH6P55285 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.65■□□□□ 0.42
CDH6P55285 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.65■□□□□ 0.42
CDH6P55285 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.65■□□□□ 0.42
CDH6P55285 RN7SL510P-201ENST00000581311 263 ntBASIC17.65■□□□□ 0.42
CDH6P55285 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.65■□□□□ 0.42
CDH6P55285 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 AL118508.1-201ENST00000613502 2345 ntBASIC17.65■□□□□ 0.42
CDH6P55285 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDH6P55285 AC079328.2-201ENST00000561241 3354 ntBASIC17.65■□□□□ 0.42
CDH6P55285 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH6P55285 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
CDH6P55285 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CDH6P55285 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.64■□□□□ 0.42
CDH6P55285 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.64■□□□□ 0.41
CDH6P55285 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDH6P55285 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms