Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.19■□□□□ 0.5
VCPP55072 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.19■□□□□ 0.5
VCPP55072 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.19■□□□□ 0.5
VCPP55072 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VCPP55072 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCPP55072 AC073592.5-201ENST00000624854 528 ntBASIC18.19■□□□□ 0.5
VCPP55072 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCPP55072 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.19■□□□□ 0.5
VCPP55072 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
VCPP55072 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCPP55072 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCPP55072 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCPP55072 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCPP55072 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCPP55072 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCPP55072 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VCPP55072 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
VCPP55072 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.18■□□□□ 0.5
VCPP55072 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.18■□□□□ 0.5
VCPP55072 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.18■□□□□ 0.5
VCPP55072 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VCPP55072 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
VCPP55072 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
VCPP55072 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.18■□□□□ 0.5
VCPP55072 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.18■□□□□ 0.5
VCPP55072 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.18■□□□□ 0.5
VCPP55072 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.18■□□□□ 0.5
VCPP55072 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.18■□□□□ 0.5
VCPP55072 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.18■□□□□ 0.5
VCPP55072 AC079776.2-201ENST00000641154 1609 ntBASIC18.18■□□□□ 0.5
VCPP55072 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.18■□□□□ 0.5
VCPP55072 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.18■□□□□ 0.5
VCPP55072 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCPP55072 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.17■□□□□ 0.5
VCPP55072 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 NKILA-202ENST00000614771 2598 ntBASIC18.17■□□□□ 0.5
VCPP55072 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.17■□□□□ 0.5
VCPP55072 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.17■□□□□ 0.5
VCPP55072 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.17■□□□□ 0.5
VCPP55072 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.17■□□□□ 0.5
VCPP55072 METTL26-204ENST00000397665 558 ntTSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.17■□□□□ 0.5
VCPP55072 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.17■□□□□ 0.5
VCPP55072 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.17■□□□□ 0.5
VCPP55072 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 AC019129.2-201ENST00000609837 1235 ntBASIC18.17■□□□□ 0.5
VCPP55072 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.17■□□□□ 0.5
VCPP55072 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VCPP55072 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.17■□□□□ 0.5
VCPP55072 AL049757.1-201ENST00000616842 1596 ntBASIC18.17■□□□□ 0.5
VCPP55072 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCPP55072 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VCPP55072 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.16■□□□□ 0.5
VCPP55072 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VCPP55072 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VCPP55072 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.16■□□□□ 0.5
VCPP55072 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCPP55072 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms