Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.37■□□□□ 0.69
SMARCA1P28370 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.37■□□□□ 0.69
SMARCA1P28370 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.37■□□□□ 0.69
SMARCA1P28370 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.37■□□□□ 0.69
SMARCA1P28370 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.37■□□□□ 0.69
SMARCA1P28370 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.37■□□□□ 0.69
SMARCA1P28370 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SMARCA1P28370 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SMARCA1P28370 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.37■□□□□ 0.69
SMARCA1P28370 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 AL161645.1-201ENST00000622716 1255 ntBASIC19.37■□□□□ 0.69
SMARCA1P28370 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.36■□□□□ 0.69
SMARCA1P28370 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
SMARCA1P28370 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
SMARCA1P28370 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
SMARCA1P28370 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SMARCA1P28370 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.36■□□□□ 0.69
SMARCA1P28370 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.36■□□□□ 0.69
SMARCA1P28370 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.36■□□□□ 0.69
SMARCA1P28370 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SMARCA1P28370 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.36■□□□□ 0.69
SMARCA1P28370 FAM58CP-201ENST00000435741 640 ntBASIC19.36■□□□□ 0.69
SMARCA1P28370 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.36■□□□□ 0.69
SMARCA1P28370 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.36■□□□□ 0.69
SMARCA1P28370 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.36■□□□□ 0.69
SMARCA1P28370 AC099522.2-201ENST00000607001 744 ntBASIC19.36■□□□□ 0.69
SMARCA1P28370 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.36■□□□□ 0.69
SMARCA1P28370 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SMARCA1P28370 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SMARCA1P28370 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMARCA1P28370 AC006538.1-201ENST00000567905 1585 ntBASIC19.36■□□□□ 0.69
SMARCA1P28370 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.35■□□□□ 0.69
SMARCA1P28370 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SMARCA1P28370 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
SMARCA1P28370 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SMARCA1P28370 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SMARCA1P28370 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.35■□□□□ 0.69
SMARCA1P28370 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SMARCA1P28370 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SMARCA1P28370 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.35■□□□□ 0.69
SMARCA1P28370 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SMARCA1P28370 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.35■□□□□ 0.69
SMARCA1P28370 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.35■□□□□ 0.69
SMARCA1P28370 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMARCA1P28370 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.35■□□□□ 0.69
SMARCA1P28370 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms