Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.78□□□□□ -0.04
COL8A1P27658 AC098614.1-201ENST00000368528 745 ntBASIC14.78□□□□□ -0.04
COL8A1P27658 AL512384.1-201ENST00000406683 331 ntBASIC14.78□□□□□ -0.04
COL8A1P27658 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
COL8A1P27658 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.78□□□□□ -0.04
COL8A1P27658 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.78□□□□□ -0.04
COL8A1P27658 AC022210.1-201ENST00000449856 793 ntBASIC14.78□□□□□ -0.04
COL8A1P27658 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.78□□□□□ -0.04
COL8A1P27658 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
COL8A1P27658 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.78□□□□□ -0.04
COL8A1P27658 AP000842.3-202ENST00000569238 1080 ntBASIC14.78□□□□□ -0.04
COL8A1P27658 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.78□□□□□ -0.04
COL8A1P27658 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
COL8A1P27658 AC027307.2-201ENST00000591252 911 ntBASIC14.78□□□□□ -0.04
COL8A1P27658 AC003101.2-201ENST00000612557 442 ntBASIC14.78□□□□□ -0.04
COL8A1P27658 SPTSSB-204ENST00000617024 1292 ntBASIC14.78□□□□□ -0.04
COL8A1P27658 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
COL8A1P27658 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
COL8A1P27658 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14.78□□□□□ -0.04
COL8A1P27658 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
COL8A1P27658 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL8A1P27658 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL8A1P27658 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL8A1P27658 BX276092.7-203ENST00000637198 1536 ntBASIC14.77□□□□□ -0.04
COL8A1P27658 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.77□□□□□ -0.04
COL8A1P27658 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL8A1P27658 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL8A1P27658 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL8A1P27658 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC14.77□□□□□ -0.04
COL8A1P27658 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL8A1P27658 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
COL8A1P27658 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.77□□□□□ -0.05
COL8A1P27658 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.77□□□□□ -0.05
COL8A1P27658 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.77□□□□□ -0.05
COL8A1P27658 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.77□□□□□ -0.05
COL8A1P27658 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.77□□□□□ -0.05
COL8A1P27658 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 AC107918.2-201ENST00000530817 355 ntBASIC14.77□□□□□ -0.05
COL8A1P27658 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.77□□□□□ -0.05
COL8A1P27658 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.77□□□□□ -0.05
COL8A1P27658 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.77□□□□□ -0.05
COL8A1P27658 GPR182-203ENST00000622922 591 ntBASIC14.77□□□□□ -0.05
COL8A1P27658 AC068587.10-201ENST00000641210 219 ntBASIC14.77□□□□□ -0.05
COL8A1P27658 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
COL8A1P27658 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC14.77□□□□□ -0.05
COL8A1P27658 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC14.77□□□□□ -0.05
COL8A1P27658 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
COL8A1P27658 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC14.77□□□□□ -0.05
COL8A1P27658 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
COL8A1P27658 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
COL8A1P27658 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.05
COL8A1P27658 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.77□□□□□ -0.05
COL8A1P27658 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.77□□□□□ -0.05
COL8A1P27658 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL8A1P27658 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.76□□□□□ -0.05
COL8A1P27658 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.76□□□□□ -0.05
COL8A1P27658 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.76□□□□□ -0.05
COL8A1P27658 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC14.76□□□□□ -0.05
COL8A1P27658 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 ANO7L1-203ENST00000602586 1720 ntBASIC14.76□□□□□ -0.05
COL8A1P27658 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.76□□□□□ -0.05
COL8A1P27658 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL8A1P27658 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.76□□□□□ -0.05
COL8A1P27658 AL353779.1-201ENST00000434793 351 ntBASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms