Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 AL391825.1-201ENST00000457671 1364 ntBASIC16.07■□□□□ 0.16
COL5A1P20908 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
COL5A1P20908 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL5A1P20908 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
COL5A1P20908 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.07■□□□□ 0.16
COL5A1P20908 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.07■□□□□ 0.16
COL5A1P20908 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
COL5A1P20908 WASH4P-201ENST00000564273 1246 ntBASIC16.07■□□□□ 0.16
COL5A1P20908 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
COL5A1P20908 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.07■□□□□ 0.16
COL5A1P20908 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 AL645608.8-201ENST00000606034 2086 ntBASIC16.07■□□□□ 0.16
COL5A1P20908 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.07■□□□□ 0.16
COL5A1P20908 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL5A1P20908 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
COL5A1P20908 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
COL5A1P20908 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL5A1P20908 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.06■□□□□ 0.16
COL5A1P20908 CROCCP2-202ENST00000412962 2773 ntBASIC16.06■□□□□ 0.16
COL5A1P20908 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.06■□□□□ 0.16
COL5A1P20908 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
COL5A1P20908 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.06■□□□□ 0.16
COL5A1P20908 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.06■□□□□ 0.16
COL5A1P20908 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL5A1P20908 TP53TG3HP-202ENST00000569755 579 ntBASIC16.06■□□□□ 0.16
COL5A1P20908 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.06■□□□□ 0.16
COL5A1P20908 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.06■□□□□ 0.16
COL5A1P20908 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.06■□□□□ 0.16
COL5A1P20908 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.06■□□□□ 0.16
COL5A1P20908 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.06■□□□□ 0.16
COL5A1P20908 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.06■□□□□ 0.16
COL5A1P20908 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
COL5A1P20908 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.06■□□□□ 0.16
COL5A1P20908 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.06■□□□□ 0.16
COL5A1P20908 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
COL5A1P20908 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL5A1P20908 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.06■□□□□ 0.16
COL5A1P20908 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL5A1P20908 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.05■□□□□ 0.16
COL5A1P20908 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.05■□□□□ 0.16
COL5A1P20908 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.05■□□□□ 0.16
COL5A1P20908 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.05■□□□□ 0.16
COL5A1P20908 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
COL5A1P20908 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.05■□□□□ 0.16
COL5A1P20908 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.05■□□□□ 0.16
COL5A1P20908 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.05■□□□□ 0.16
COL5A1P20908 AL133215.2-201ENST00000609242 977 ntBASIC16.05■□□□□ 0.16
COL5A1P20908 AC004790.1-201ENST00000612686 536 ntBASIC16.05■□□□□ 0.16
COL5A1P20908 AC093525.9-201ENST00000624961 1746 ntBASIC16.05■□□□□ 0.16
COL5A1P20908 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
COL5A1P20908 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 PP12613-201ENST00000424958 2230 ntBASIC16.05■□□□□ 0.16
COL5A1P20908 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.05■□□□□ 0.16
COL5A1P20908 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.05■□□□□ 0.16
COL5A1P20908 BTBD7P1-201ENST00000447253 1453 ntBASIC16.05■□□□□ 0.16
COL5A1P20908 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.05■□□□□ 0.16
COL5A1P20908 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.05■□□□□ 0.16
COL5A1P20908 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.05■□□□□ 0.16
COL5A1P20908 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
COL5A1P20908 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
COL5A1P20908 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
COL5A1P20908 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms