Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGA1P17096 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
HMGA1P17096 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
HMGA1P17096 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGA1P17096 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
HMGA1P17096 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGA1P17096 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.48■□□□□ 0.39
HMGA1P17096 AC051619.7-201ENST00000568314 623 ntBASIC17.48■□□□□ 0.39
HMGA1P17096 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
HMGA1P17096 AL390955.2-201ENST00000603032 514 ntBASIC17.48■□□□□ 0.39
HMGA1P17096 LINC02084-201ENST00000606069 1096 ntBASIC17.48■□□□□ 0.39
HMGA1P17096 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGA1P17096 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGA1P17096 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGA1P17096 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGA1P17096 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGA1P17096 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGA1P17096 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGA1P17096 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGA1P17096 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGA1P17096 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGA1P17096 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
HMGA1P17096 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGA1P17096 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGA1P17096 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGA1P17096 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGA1P17096 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HMGA1P17096 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 PCDHB17P-201ENST00000539533 2393 ntBASIC17.47■□□□□ 0.39
HMGA1P17096 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 AL023806.1-201ENST00000603994 1649 ntBASIC17.47■□□□□ 0.39
HMGA1P17096 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGA1P17096 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGA1P17096 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGA1P17096 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGA1P17096 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGA1P17096 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGA1P17096 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGA1P17096 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGA1P17096 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGA1P17096 DUX4L27-201ENST00000554796 1261 ntBASIC17.47■□□□□ 0.39
HMGA1P17096 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.47■□□□□ 0.39
HMGA1P17096 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGA1P17096 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGA1P17096 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGA1P17096 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGA1P17096 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGA1P17096 SNX33P1-201ENST00000592116 1762 ntBASIC17.47■□□□□ 0.39
HMGA1P17096 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGA1P17096 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGA1P17096 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
HMGA1P17096 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
HMGA1P17096 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
HMGA1P17096 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HMGA1P17096 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
HMGA1P17096 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.46■□□□□ 0.39
HMGA1P17096 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGA1P17096 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.46■□□□□ 0.39
HMGA1P17096 CNN2P2-201ENST00000443536 909 ntBASIC17.46■□□□□ 0.39
HMGA1P17096 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HMGA1P17096 CNN2P3-201ENST00000450201 906 ntBASIC17.46■□□□□ 0.39
HMGA1P17096 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 AC067863.1-201ENST00000494933 530 ntBASIC17.46■□□□□ 0.39
HMGA1P17096 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.46■□□□□ 0.39
HMGA1P17096 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.46■□□□□ 0.39
HMGA1P17096 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGA1P17096 SPCS2P1-201ENST00000561636 679 ntBASIC17.46■□□□□ 0.39
HMGA1P17096 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGA1P17096 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.46■□□□□ 0.39
HMGA1P17096 AL136317.3-201ENST00000618497 906 ntBASIC17.46■□□□□ 0.39
HMGA1P17096 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HMGA1P17096 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGA1P17096 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
HMGA1P17096 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.46■□□□□ 0.38
HMGA1P17096 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms