Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC073439.1-201ENST00000624121 1774 ntBASIC17.4■□□□□ 0.38
COL6A3P12111 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A3P12111 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A3P12111 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
COL6A3P12111 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COL6A3P12111 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A3P12111 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.4■□□□□ 0.38
COL6A3P12111 AC068587.3-201ENST00000526613 355 ntBASIC17.4■□□□□ 0.38
COL6A3P12111 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A3P12111 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.39■□□□□ 0.38
COL6A3P12111 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL6A3P12111 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.39■□□□□ 0.38
COL6A3P12111 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.39■□□□□ 0.37
COL6A3P12111 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.39■□□□□ 0.37
COL6A3P12111 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
COL6A3P12111 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
COL6A3P12111 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
COL6A3P12111 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.39■□□□□ 0.37
COL6A3P12111 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A3P12111 AC092337.1-201ENST00000568699 1129 ntBASIC17.39■□□□□ 0.37
COL6A3P12111 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.39■□□□□ 0.37
COL6A3P12111 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A3P12111 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
COL6A3P12111 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A3P12111 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A3P12111 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.39■□□□□ 0.37
COL6A3P12111 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A3P12111 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A3P12111 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A3P12111 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.39■□□□□ 0.37
COL6A3P12111 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A3P12111 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A3P12111 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A3P12111 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A3P12111 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A3P12111 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
COL6A3P12111 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
COL6A3P12111 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A3P12111 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A3P12111 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A3P12111 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A3P12111 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A3P12111 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A3P12111 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A3P12111 CSH2-202ENST00000345366 598 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A3P12111 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A3P12111 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A3P12111 FNTAP2-201ENST00000430308 634 ntBASIC17.38■□□□□ 0.37
COL6A3P12111 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A3P12111 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A3P12111 AC004461.2-201ENST00000629517 803 ntBASIC17.38■□□□□ 0.37
COL6A3P12111 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A3P12111 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL6A3P12111 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.38■□□□□ 0.37
COL6A3P12111 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A3P12111 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A3P12111 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A3P12111 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.38■□□□□ 0.37
COL6A3P12111 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.38■□□□□ 0.37
COL6A3P12111 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A3P12111 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A3P12111 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
COL6A3P12111 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
COL6A3P12111 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.37■□□□□ 0.37
COL6A3P12111 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.37■□□□□ 0.37
COL6A3P12111 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC17.37■□□□□ 0.37
COL6A3P12111 MIR1227-201ENST00000408484 88 ntBASIC17.37■□□□□ 0.37
COL6A3P12111 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.37■□□□□ 0.37
COL6A3P12111 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.37■□□□□ 0.37
COL6A3P12111 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC17.37■□□□□ 0.37
COL6A3P12111 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
COL6A3P12111 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A3P12111 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms