Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
LMX1BO60663 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
LMX1BO60663 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC14.97□□□□□ -0.01
LMX1BO60663 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1BO60663 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC14.97□□□□□ -0.01
LMX1BO60663 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 AC008741.2-201ENST00000612792 3115 ntBASIC14.97□□□□□ -0.01
LMX1BO60663 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1BO60663 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1BO60663 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1BO60663 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.96□□□□□ -0.01
LMX1BO60663 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
LMX1BO60663 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.01
LMX1BO60663 RPL13AP23-201ENST00000480739 586 ntBASIC14.96□□□□□ -0.01
LMX1BO60663 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1BO60663 STK19B-204ENST00000512515 211 ntBASIC14.96□□□□□ -0.01
LMX1BO60663 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC14.96□□□□□ -0.01
LMX1BO60663 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.96□□□□□ -0.01
LMX1BO60663 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC14.96□□□□□ -0.01
LMX1BO60663 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC14.96□□□□□ -0.01
LMX1BO60663 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1BO60663 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC14.96□□□□□ -0.01
LMX1BO60663 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1BO60663 AC009336.1-201ENST00000608941 1553 ntBASIC14.96□□□□□ -0.01
LMX1BO60663 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1BO60663 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
LMX1BO60663 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1BO60663 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1BO60663 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC14.96□□□□□ -0.02
LMX1BO60663 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
LMX1BO60663 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1BO60663 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1BO60663 AC243591.1-201ENST00000452967 1364 ntBASIC14.96□□□□□ -0.02
LMX1BO60663 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1BO60663 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
LMX1BO60663 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1BO60663 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1BO60663 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
LMX1BO60663 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
LMX1BO60663 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
LMX1BO60663 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
LMX1BO60663 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
LMX1BO60663 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.95□□□□□ -0.02
LMX1BO60663 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
LMX1BO60663 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
LMX1BO60663 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
LMX1BO60663 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 FABP5-202ENST00000396359 986 ntTSL 5 BASIC14.95□□□□□ -0.02
LMX1BO60663 BX842568.4-201ENST00000421222 227 ntBASIC14.95□□□□□ -0.02
LMX1BO60663 AC018712.1-201ENST00000455767 687 ntBASIC14.95□□□□□ -0.02
LMX1BO60663 SCARNA2-201ENST00000458748 420 ntBASIC14.95□□□□□ -0.02
LMX1BO60663 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 AC124947.2-201ENST00000547118 1133 ntBASIC14.95□□□□□ -0.02
LMX1BO60663 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC14.95□□□□□ -0.02
LMX1BO60663 LITAF-211ENST00000572255 516 ntTSL 4 BASIC14.95□□□□□ -0.02
LMX1BO60663 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
LMX1BO60663 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.95□□□□□ -0.02
LMX1BO60663 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
LMX1BO60663 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.95□□□□□ -0.02
LMX1BO60663 AL355877.3-201ENST00000622820 899 ntBASIC14.95□□□□□ -0.02
LMX1BO60663 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.95□□□□□ -0.02
LMX1BO60663 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC14.95□□□□□ -0.02
LMX1BO60663 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC14.95□□□□□ -0.02
LMX1BO60663 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 DOC2GP-204ENST00000639052 2548 ntBASIC14.95□□□□□ -0.02
LMX1BO60663 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1BO60663 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1BO60663 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms