Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.98■□□□□ 0.63
MSH4O15457 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH4O15457 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
MSH4O15457 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH4O15457 HTR5BP-201ENST00000430851 1154 ntBASIC18.98■□□□□ 0.63
MSH4O15457 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH4O15457 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.98■□□□□ 0.63
MSH4O15457 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.98■□□□□ 0.63
MSH4O15457 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.98■□□□□ 0.63
MSH4O15457 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.98■□□□□ 0.63
MSH4O15457 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.98■□□□□ 0.63
MSH4O15457 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.98■□□□□ 0.63
MSH4O15457 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.98■□□□□ 0.63
MSH4O15457 LINC00895-201ENST00000629028 1637 ntBASIC18.98■□□□□ 0.63
MSH4O15457 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
MSH4O15457 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
MSH4O15457 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
MSH4O15457 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH4O15457 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
MSH4O15457 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
MSH4O15457 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.97■□□□□ 0.63
MSH4O15457 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
MSH4O15457 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
MSH4O15457 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.97■□□□□ 0.63
MSH4O15457 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.97■□□□□ 0.63
MSH4O15457 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
MSH4O15457 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.97■□□□□ 0.63
MSH4O15457 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
MSH4O15457 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.97■□□□□ 0.63
MSH4O15457 FAM58CP-201ENST00000435741 640 ntBASIC18.97■□□□□ 0.63
MSH4O15457 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.97■□□□□ 0.63
MSH4O15457 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.97■□□□□ 0.63
MSH4O15457 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.97■□□□□ 0.63
MSH4O15457 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.97■□□□□ 0.63
MSH4O15457 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.97■□□□□ 0.63
MSH4O15457 AC005829.1-201ENST00000570002 483 ntBASIC18.97■□□□□ 0.63
MSH4O15457 MIR3687-2-201ENST00000577708 61 ntBASIC18.97■□□□□ 0.63
MSH4O15457 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.97■□□□□ 0.63
MSH4O15457 MIR3687-1-201ENST00000614492 61 ntBASIC18.97■□□□□ 0.63
MSH4O15457 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.97■□□□□ 0.63
MSH4O15457 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 AC092902.6-201ENST00000641783 218 ntBASIC18.97■□□□□ 0.63
MSH4O15457 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
MSH4O15457 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.97■□□□□ 0.63
MSH4O15457 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
MSH4O15457 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 AL391256.1-201ENST00000443260 1855 ntBASIC18.97■□□□□ 0.63
MSH4O15457 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSH4O15457 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.96■□□□□ 0.63
MSH4O15457 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 SNX33P1-201ENST00000592116 1762 ntBASIC18.96■□□□□ 0.63
MSH4O15457 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.96■□□□□ 0.63
MSH4O15457 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.96■□□□□ 0.63
MSH4O15457 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
MSH4O15457 YBX1P5-201ENST00000509441 847 ntBASIC18.96■□□□□ 0.63
MSH4O15457 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.96■□□□□ 0.63
MSH4O15457 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.96■□□□□ 0.63
MSH4O15457 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.96■□□□□ 0.63
MSH4O15457 AC006538.3-201ENST00000612495 578 ntBASIC18.96■□□□□ 0.63
MSH4O15457 AC139530.3-201ENST00000620344 690 ntBASIC18.96■□□□□ 0.63
MSH4O15457 AP001350.2-201ENST00000625104 1094 ntBASIC18.96■□□□□ 0.63
MSH4O15457 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
MSH4O15457 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
MSH4O15457 AL671710.1-201ENST00000610245 2349 ntBASIC18.96■□□□□ 0.63
MSH4O15457 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH4O15457 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
MSH4O15457 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.95■□□□□ 0.62
MSH4O15457 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH4O15457 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
MSH4O15457 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms