Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 GNAS-203ENST00000306120 1878 ntBASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
SHROOM4Q9ULL8 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
SHROOM4Q9ULL8 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC32■■■□□ 2.71
SHROOM4Q9ULL8 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC32■■■□□ 2.71
SHROOM4Q9ULL8 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC32■■■□□ 2.71
SHROOM4Q9ULL8 AC140912.1-201ENST00000577171 1054 ntBASIC32■■■□□ 2.71
SHROOM4Q9ULL8 CD7-202ENST00000578509 925 ntTSL 3 BASIC32■■■□□ 2.71
SHROOM4Q9ULL8 SPDYE12P-201ENST00000618416 771 ntBASIC32■■■□□ 2.71
SHROOM4Q9ULL8 IGHV3-72-202ENST00000621503 303 ntBASIC32■■■□□ 2.71
SHROOM4Q9ULL8 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
SHROOM4Q9ULL8 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
SHROOM4Q9ULL8 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC32■■■□□ 2.71
SHROOM4Q9ULL8 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
SHROOM4Q9ULL8 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 HMGA1P7-201ENST00000406908 502 ntBASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 AC009477.1-201ENST00000452936 217 ntBASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM4Q9ULL8 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 SLC22A20-204ENST00000530038 1673 ntBASIC31.98■■■□□ 2.71
SHROOM4Q9ULL8 MIR1909-201ENST00000411312 80 ntBASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 MIR3909-201ENST00000579518 119 ntBASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 AP000842.3-202ENST00000569238 1080 ntBASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 TP53TG3HP-202ENST00000569755 579 ntBASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 MIR4515-201ENST00000584082 81 ntBASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC31.97■■■□□ 2.71
SHROOM4Q9ULL8 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 IGHV3-62-201ENST00000520057 340 ntBASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
SHROOM4Q9ULL8 PP12613-201ENST00000424958 2230 ntBASIC31.95■■■□□ 2.71
SHROOM4Q9ULL8 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.71
SHROOM4Q9ULL8 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
SHROOM4Q9ULL8 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC31.95■■■□□ 2.71
SHROOM4Q9ULL8 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC31.95■■■□□ 2.71
SHROOM4Q9ULL8 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
SHROOM4Q9ULL8 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC31.95■■■□□ 2.71
SHROOM4Q9ULL8 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms