Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 AC074051.2-201ENST00000565115 352 ntBASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 Z69720.1-201ENST00000601483 472 ntBASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 AC092119.3-201ENST00000612618 583 ntBASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 PCDHB17P-201ENST00000539533 2393 ntBASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 PMPCAP1-201ENST00000508114 1576 ntBASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 AP000867.3-201ENST00000524675 377 ntBASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM56Q9BRZ2 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 AC003669.1-201ENST00000334569 611 ntBASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRIM56Q9BRZ2 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 AC008741.2-201ENST00000612792 3115 ntBASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM56Q9BRZ2 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms