Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 AL391005.1-201ENST00000623953 2435 ntBASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 AC026691.1-201ENST00000602502 2017 ntBASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 TUBB8P12-201ENST00000308911 1335 ntBASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 TUBB7P-202ENST00000428444 1305 ntBASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 TUBB8P7-204ENST00000567960 1332 ntBASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
ATG4AQ8WYN0 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
ATG4AQ8WYN0 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
ATG4AQ8WYN0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
ATG4AQ8WYN0 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 AC104819.1-201ENST00000504587 486 ntBASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4AQ8WYN0 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 PCDHA1-201ENST00000378133 2726 ntBASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 NUS1P2-201ENST00000417358 873 ntBASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 LINC00982-205ENST00000420957 435 ntBASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 AC092329.2-201ENST00000598402 547 ntBASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 AC099336.1-202ENST00000602961 463 ntBASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 NPAP1P7-201ENST00000613027 823 ntBASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 AL139384.1-201ENST00000612143 3047 ntBASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms