Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDDC3Q8N4P3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.02■□□□□ 0.31
HDDC3Q8N4P3 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HDDC3Q8N4P3 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HDDC3Q8N4P3 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.02■□□□□ 0.31
HDDC3Q8N4P3 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.02■□□□□ 0.31
HDDC3Q8N4P3 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 AL121761.2-201ENST00000598007 1648 ntBASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 HMGA1P7-201ENST00000406908 502 ntBASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 AL671277.1-201ENST00000429656 993 ntBASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 AC109322.1-201ENST00000524499 1264 ntBASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 AC022145.2-201ENST00000598203 171 ntBASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 NOC2LP2-201ENST00000407594 1944 ntBASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 AC012569.1-201ENST00000591191 1524 ntBASIC17.01■□□□□ 0.31
HDDC3Q8N4P3 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 TIMM8BP1-201ENST00000452384 211 ntBASIC17■□□□□ 0.31
HDDC3Q8N4P3 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 AC093214.1-201ENST00000511688 1107 ntBASIC17■□□□□ 0.31
HDDC3Q8N4P3 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 CD7-202ENST00000578509 925 ntTSL 3 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 AJ011932.1-201ENST00000621707 465 ntBASIC17■□□□□ 0.31
HDDC3Q8N4P3 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
HDDC3Q8N4P3 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HDDC3Q8N4P3 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 SLC25A1P3-201ENST00000395415 828 ntBASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 INGX-202ENST00000489074 768 ntBASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HDDC3Q8N4P3 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms