Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC19.11■□□□□ 0.65
TPM4P67936 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.11■□□□□ 0.65
TPM4P67936 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 AC022188.1-201ENST00000620960 1664 ntBASIC19.11■□□□□ 0.65
TPM4P67936 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.11■□□□□ 0.65
TPM4P67936 FRMD8P1-201ENST00000440433 1524 ntBASIC19.1■□□□□ 0.65
TPM4P67936 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
TPM4P67936 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.1■□□□□ 0.65
TPM4P67936 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
TPM4P67936 TSPY26P-202ENST00000565928 3884 ntBASIC19.1■□□□□ 0.65
TPM4P67936 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
TPM4P67936 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.1■□□□□ 0.65
TPM4P67936 STK25P1-201ENST00000585406 838 ntBASIC19.1■□□□□ 0.65
TPM4P67936 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.1■□□□□ 0.65
TPM4P67936 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.1■□□□□ 0.65
TPM4P67936 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 AC007326.2-201ENST00000624224 7579 ntBASIC19.1■□□□□ 0.65
TPM4P67936 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.1■□□□□ 0.65
TPM4P67936 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
TPM4P67936 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
TPM4P67936 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TPM4P67936 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TPM4P67936 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.09■□□□□ 0.65
TPM4P67936 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TPM4P67936 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TPM4P67936 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 AL662844.4-201ENST00000606367 2838 ntBASIC19.09■□□□□ 0.65
TPM4P67936 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TPM4P67936 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
TPM4P67936 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.09■□□□□ 0.65
TPM4P67936 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.09■□□□□ 0.65
TPM4P67936 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.09■□□□□ 0.65
TPM4P67936 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 SLC25A3P1-201ENST00000443844 931 ntBASIC19.09■□□□□ 0.65
TPM4P67936 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.09■□□□□ 0.65
TPM4P67936 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.09■□□□□ 0.65
TPM4P67936 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.09■□□□□ 0.65
TPM4P67936 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.09■□□□□ 0.65
TPM4P67936 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.09■□□□□ 0.65
TPM4P67936 AC068418.2-201ENST00000577309 3703 ntBASIC19.09■□□□□ 0.65
TPM4P67936 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.09■□□□□ 0.65
TPM4P67936 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 HLA-A-202ENST00000376806 1854 ntBASIC19.09■□□□□ 0.65
TPM4P67936 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TPM4P67936 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TPM4P67936 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.09■□□□□ 0.65
TPM4P67936 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
TPM4P67936 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
TPM4P67936 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.08■□□□□ 0.65
TPM4P67936 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
TPM4P67936 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
TPM4P67936 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TPM4P67936 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TPM4P67936 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
TPM4P67936 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TPM4P67936 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TPM4P67936 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC19.08■□□□□ 0.65
TPM4P67936 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms