Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.76■□□□□ 0.75
SCN4AP35499 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC19.76■□□□□ 0.75
SCN4AP35499 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC19.76■□□□□ 0.75
SCN4AP35499 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN4AP35499 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN4AP35499 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SCN4AP35499 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.75■□□□□ 0.75
SCN4AP35499 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN4AP35499 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SCN4AP35499 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.75■□□□□ 0.75
SCN4AP35499 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN4AP35499 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC19.75■□□□□ 0.75
SCN4AP35499 CSF2RBP1-201ENST00000447905 391 ntBASIC19.75■□□□□ 0.75
SCN4AP35499 CTBP2P5-201ENST00000454986 1264 ntBASIC19.75■□□□□ 0.75
SCN4AP35499 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SCN4AP35499 RNA5SP412-201ENST00000516234 123 ntBASIC19.75■□□□□ 0.75
SCN4AP35499 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC19.75■□□□□ 0.75
SCN4AP35499 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN4AP35499 MIR8072-201ENST00000614241 80 ntBASIC19.75■□□□□ 0.75
SCN4AP35499 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN4AP35499 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC19.75■□□□□ 0.75
SCN4AP35499 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN4AP35499 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN4AP35499 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SCN4AP35499 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
SCN4AP35499 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.74■□□□□ 0.75
SCN4AP35499 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
SCN4AP35499 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 KRT43P-201ENST00000434019 910 ntBASIC19.74■□□□□ 0.75
SCN4AP35499 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.74■□□□□ 0.75
SCN4AP35499 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.74■□□□□ 0.75
SCN4AP35499 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC19.74■□□□□ 0.75
SCN4AP35499 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
SCN4AP35499 ARL16-210ENST00000574938 751 ntTSL 2 BASIC19.74■□□□□ 0.75
SCN4AP35499 AC103810.3-201ENST00000583567 96 ntBASIC19.74■□□□□ 0.75
SCN4AP35499 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC19.74■□□□□ 0.75
SCN4AP35499 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC19.74■□□□□ 0.75
SCN4AP35499 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.74■□□□□ 0.75
SCN4AP35499 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SCN4AP35499 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.74■□□□□ 0.75
SCN4AP35499 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SCN4AP35499 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 AC099336.1-201ENST00000417053 1171 ntBASIC19.74■□□□□ 0.75
SCN4AP35499 AGER-214ENST00000538695 487 ntTSL 2 BASIC19.74■□□□□ 0.75
SCN4AP35499 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 PIGL-212ENST00000581006 554 ntTSL 4 BASIC19.74■□□□□ 0.75
SCN4AP35499 AC233724.13-201ENST00000598383 410 ntBASIC19.74■□□□□ 0.75
SCN4AP35499 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC19.74■□□□□ 0.75
SCN4AP35499 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SCN4AP35499 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
SCN4AP35499 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN4AP35499 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN4AP35499 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN4AP35499 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN4AP35499 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN4AP35499 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SCN4AP35499 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN4AP35499 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.73■□□□□ 0.75
SCN4AP35499 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN4AP35499 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SCN4AP35499 MPDU1-223ENST00000582151 728 ntBASIC19.73■□□□□ 0.75
SCN4AP35499 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC19.73■□□□□ 0.75
SCN4AP35499 AL033527.5-201ENST00000641382 801 ntBASIC19.73■□□□□ 0.75
SCN4AP35499 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN4AP35499 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.73■□□□□ 0.75
SCN4AP35499 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SCN4AP35499 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms