Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.88■□□□□ 0.45
BDNFP23560 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
BDNFP23560 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
BDNFP23560 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.88■□□□□ 0.45
BDNFP23560 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
BDNFP23560 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.88■□□□□ 0.45
BDNFP23560 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
BDNFP23560 AC211486.1-202ENST00000416371 468 ntBASIC17.88■□□□□ 0.45
BDNFP23560 MKNK2P1-201ENST00000437526 628 ntBASIC17.88■□□□□ 0.45
BDNFP23560 AC004967.1-201ENST00000453589 447 ntBASIC17.88■□□□□ 0.45
BDNFP23560 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.88■□□□□ 0.45
BDNFP23560 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 AC211476.1-201ENST00000503899 468 ntBASIC17.88■□□□□ 0.45
BDNFP23560 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.88■□□□□ 0.45
BDNFP23560 YBX1P5-201ENST00000509441 847 ntBASIC17.88■□□□□ 0.45
BDNFP23560 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.88■□□□□ 0.45
BDNFP23560 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.88■□□□□ 0.45
BDNFP23560 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.88■□□□□ 0.45
BDNFP23560 AL031432.2-201ENST00000566714 459 ntBASIC17.88■□□□□ 0.45
BDNFP23560 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.88■□□□□ 0.45
BDNFP23560 AL928711.1-201ENST00000570165 459 ntBASIC17.88■□□□□ 0.45
BDNFP23560 AP002472.1-201ENST00000577490 586 ntBASIC17.88■□□□□ 0.45
BDNFP23560 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.88■□□□□ 0.45
BDNFP23560 AL645728.2-201ENST00000641974 660 ntBASIC17.88■□□□□ 0.45
BDNFP23560 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
BDNFP23560 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.88■□□□□ 0.45
BDNFP23560 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BDNFP23560 AC092068.3-201ENST00000587894 2016 ntBASIC17.88■□□□□ 0.45
BDNFP23560 AL645608.8-201ENST00000606034 2086 ntBASIC17.87■□□□□ 0.45
BDNFP23560 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 AC108860.2-201ENST00000562760 2183 ntBASIC17.87■□□□□ 0.45
BDNFP23560 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
BDNFP23560 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
BDNFP23560 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
BDNFP23560 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 CEND1P1-201ENST00000451006 455 ntBASIC17.87■□□□□ 0.45
BDNFP23560 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.87■□□□□ 0.45
BDNFP23560 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
BDNFP23560 AL021920.2-201ENST00000624828 1351 ntBASIC17.87■□□□□ 0.45
BDNFP23560 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.87■□□□□ 0.45
BDNFP23560 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 AL353732.1-201ENST00000569618 1459 ntBASIC17.87■□□□□ 0.45
BDNFP23560 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.87■□□□□ 0.45
BDNFP23560 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
BDNFP23560 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
BDNFP23560 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
BDNFP23560 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
BDNFP23560 ELL2P1-201ENST00000413990 1906 ntBASIC17.86■□□□□ 0.45
BDNFP23560 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
BDNFP23560 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 HMGA1P7-201ENST00000406908 502 ntBASIC17.86■□□□□ 0.45
BDNFP23560 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.86■□□□□ 0.45
BDNFP23560 AC124947.2-201ENST00000547118 1133 ntBASIC17.86■□□□□ 0.45
BDNFP23560 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
BDNFP23560 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 KRT8P49-201ENST00000604166 1432 ntBASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms