Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRCH3Q96II8 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.33■□□□□ 0.53
LRCH3Q96II8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LRCH3Q96II8 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LRCH3Q96II8 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRCH3Q96II8 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRCH3Q96II8 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRCH3Q96II8 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.33■□□□□ 0.53
LRCH3Q96II8 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRCH3Q96II8 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.33■□□□□ 0.53
LRCH3Q96II8 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
LRCH3Q96II8 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.33■□□□□ 0.53
LRCH3Q96II8 MIR346-201ENST00000362234 95 ntBASIC18.33■□□□□ 0.52
LRCH3Q96II8 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRCH3Q96II8 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRCH3Q96II8 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LRCH3Q96II8 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 AC027307.2-201ENST00000591252 911 ntBASIC18.33■□□□□ 0.52
LRCH3Q96II8 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.33■□□□□ 0.52
LRCH3Q96II8 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 BICD1-207ENST00000551848 1962 ntBASIC18.33■□□□□ 0.52
LRCH3Q96II8 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRCH3Q96II8 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LRCH3Q96II8 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LRCH3Q96II8 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 GOLGA2P4-201ENST00000441462 777 ntBASIC18.32■□□□□ 0.52
LRCH3Q96II8 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 RHOQP1-201ENST00000555758 579 ntBASIC18.32■□□□□ 0.52
LRCH3Q96II8 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 AC103810.3-201ENST00000583567 96 ntBASIC18.32■□□□□ 0.52
LRCH3Q96II8 MIR4515-201ENST00000584082 81 ntBASIC18.32■□□□□ 0.52
LRCH3Q96II8 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 AC008267.7-201ENST00000624570 1194 ntBASIC18.32■□□□□ 0.52
LRCH3Q96II8 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRCH3Q96II8 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LRCH3Q96II8 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 PCDHB18P-201ENST00000524813 2368 ntBASIC18.31■□□□□ 0.52
LRCH3Q96II8 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 HMGA1P7-201ENST00000406908 502 ntBASIC18.31■□□□□ 0.52
LRCH3Q96II8 AC087499.6-201ENST00000411576 835 ntBASIC18.31■□□□□ 0.52
LRCH3Q96II8 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.31■□□□□ 0.52
LRCH3Q96II8 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 AC099548.2-209ENST00000480264 625 ntBASIC18.31■□□□□ 0.52
LRCH3Q96II8 MFF-223ENST00000524634 647 ntTSL 2 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 AL009183.1-201ENST00000603760 355 ntBASIC18.31■□□□□ 0.52
LRCH3Q96II8 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms