Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AL355385.1-201ENST00000606123 409 ntBASIC18.63■□□□□ 0.57
CLCN3P51790 AC026120.1-201ENST00000611536 926 ntBASIC18.63■□□□□ 0.57
CLCN3P51790 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.63■□□□□ 0.57
CLCN3P51790 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLCN3P51790 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLCN3P51790 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.62■□□□□ 0.57
CLCN3P51790 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.62■□□□□ 0.57
CLCN3P51790 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CLCN3P51790 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CLCN3P51790 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CLCN3P51790 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CLCN3P51790 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 HCG4-201ENST00000418983 998 ntBASIC18.62■□□□□ 0.57
CLCN3P51790 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.62■□□□□ 0.57
CLCN3P51790 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.62■□□□□ 0.57
CLCN3P51790 MPDU1-223ENST00000582151 728 ntBASIC18.62■□□□□ 0.57
CLCN3P51790 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.62■□□□□ 0.57
CLCN3P51790 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.62■□□□□ 0.57
CLCN3P51790 AC093028.1-201ENST00000622998 982 ntBASIC18.62■□□□□ 0.57
CLCN3P51790 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.62■□□□□ 0.57
CLCN3P51790 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 KRT8P49-201ENST00000604166 1432 ntBASIC18.62■□□□□ 0.57
CLCN3P51790 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.62■□□□□ 0.57
CLCN3P51790 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
CLCN3P51790 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.62■□□□□ 0.57
CLCN3P51790 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.62■□□□□ 0.57
CLCN3P51790 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLCN3P51790 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.62■□□□□ 0.57
CLCN3P51790 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.61■□□□□ 0.57
CLCN3P51790 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.61■□□□□ 0.57
CLCN3P51790 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.61■□□□□ 0.57
CLCN3P51790 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.61■□□□□ 0.57
CLCN3P51790 AC131009.4-201ENST00000624048 1740 ntBASIC18.61■□□□□ 0.57
CLCN3P51790 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.61■□□□□ 0.57
CLCN3P51790 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 TFAMP1-201ENST00000412727 736 ntBASIC18.61■□□□□ 0.57
CLCN3P51790 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 SPDYE11-202ENST00000450699 704 ntBASIC18.61■□□□□ 0.57
CLCN3P51790 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CLCN3P51790 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.61■□□□□ 0.57
CLCN3P51790 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.61■□□□□ 0.57
CLCN3P51790 AC087641.1-201ENST00000557561 1021 ntBASIC18.61■□□□□ 0.57
CLCN3P51790 AC093520.2-201ENST00000561830 333 ntBASIC18.61■□□□□ 0.57
CLCN3P51790 AL135744.1-201ENST00000565098 629 ntBASIC18.61■□□□□ 0.57
CLCN3P51790 SPDYE9P-201ENST00000570642 692 ntBASIC18.61■□□□□ 0.57
CLCN3P51790 SPDYE10P-202ENST00000612005 668 ntBASIC18.61■□□□□ 0.57
CLCN3P51790 SPDYE8P-202ENST00000612377 668 ntBASIC18.61■□□□□ 0.57
CLCN3P51790 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CLCN3P51790 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.61■□□□□ 0.57
CLCN3P51790 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCN3P51790 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.61■□□□□ 0.57
CLCN3P51790 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CLCN3P51790 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CLCN3P51790 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.6■□□□□ 0.57
CLCN3P51790 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.6■□□□□ 0.57
CLCN3P51790 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
CLCN3P51790 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.6■□□□□ 0.57
CLCN3P51790 AC106820.2-201ENST00000563775 3264 ntBASIC18.6■□□□□ 0.57
CLCN3P51790 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 AL021920.2-201ENST00000624828 1351 ntBASIC18.6■□□□□ 0.57
CLCN3P51790 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms