Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.61■□□□□ 0.73
CTCFP49711 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTCFP49711 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CTCFP49711 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.61■□□□□ 0.73
CTCFP49711 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.6■□□□□ 0.73
CTCFP49711 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
CTCFP49711 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CTCFP49711 HMGA1P7-201ENST00000406908 502 ntBASIC19.6■□□□□ 0.73
CTCFP49711 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.6■□□□□ 0.73
CTCFP49711 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.6■□□□□ 0.73
CTCFP49711 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC19.6■□□□□ 0.73
CTCFP49711 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
CTCFP49711 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.6■□□□□ 0.73
CTCFP49711 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 TECR-220ENST00000600083 1204 ntTSL 2 BASIC19.6■□□□□ 0.73
CTCFP49711 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.6■□□□□ 0.73
CTCFP49711 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC19.6■□□□□ 0.73
CTCFP49711 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.6■□□□□ 0.73
CTCFP49711 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 WIZP1-201ENST00000531444 2299 ntBASIC19.6■□□□□ 0.73
CTCFP49711 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CTCFP49711 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CTCFP49711 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.6■□□□□ 0.73
CTCFP49711 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CTCFP49711 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CTCFP49711 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.59■□□□□ 0.73
CTCFP49711 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CTCFP49711 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 OSM-203ENST00000403463 464 ntTSL 3 BASIC19.59■□□□□ 0.73
CTCFP49711 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC19.59■□□□□ 0.73
CTCFP49711 TMEM14DP-201ENST00000422205 345 ntBASIC19.59■□□□□ 0.73
CTCFP49711 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC19.59■□□□□ 0.73
CTCFP49711 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.59■□□□□ 0.73
CTCFP49711 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.59■□□□□ 0.73
CTCFP49711 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
CTCFP49711 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CTCFP49711 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.58■□□□□ 0.73
CTCFP49711 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.58■□□□□ 0.73
CTCFP49711 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CTCFP49711 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTCFP49711 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CTCFP49711 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTCFP49711 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTCFP49711 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC19.58■□□□□ 0.72
CTCFP49711 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CTCFP49711 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC19.58■□□□□ 0.72
CTCFP49711 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.58■□□□□ 0.72
CTCFP49711 AGER-214ENST00000538695 487 ntTSL 2 BASIC19.58■□□□□ 0.72
CTCFP49711 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.58■□□□□ 0.72
CTCFP49711 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CTCFP49711 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.58■□□□□ 0.72
CTCFP49711 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CTCFP49711 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CTCFP49711 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CTCFP49711 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CTCFP49711 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CTCFP49711 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms