Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 AC004870.1-201ENST00000315132 882 ntBASIC16.55■□□□□ 0.24
HNF4AP41235 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.55■□□□□ 0.24
HNF4AP41235 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.55■□□□□ 0.24
HNF4AP41235 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.55■□□□□ 0.24
HNF4AP41235 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.55■□□□□ 0.24
HNF4AP41235 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.55■□□□□ 0.24
HNF4AP41235 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.55■□□□□ 0.24
HNF4AP41235 AL022326.1-202ENST00000641533 845 ntBASIC16.55■□□□□ 0.24
HNF4AP41235 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.55■□□□□ 0.24
HNF4AP41235 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.55■□□□□ 0.24
HNF4AP41235 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.55■□□□□ 0.24
HNF4AP41235 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HNF4AP41235 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HNF4AP41235 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.54■□□□□ 0.24
HNF4AP41235 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
HNF4AP41235 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HNF4AP41235 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
HNF4AP41235 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.54■□□□□ 0.24
HNF4AP41235 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 AC092068.3-201ENST00000587894 2016 ntBASIC16.54■□□□□ 0.24
HNF4AP41235 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.54■□□□□ 0.24
HNF4AP41235 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HNF4AP41235 AC079781.3-201ENST00000449110 356 ntBASIC16.54■□□□□ 0.24
HNF4AP41235 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.54■□□□□ 0.24
HNF4AP41235 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
HNF4AP41235 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.54■□□□□ 0.24
HNF4AP41235 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.54■□□□□ 0.24
HNF4AP41235 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HNF4AP41235 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HNF4AP41235 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.54■□□□□ 0.24
HNF4AP41235 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.54■□□□□ 0.24
HNF4AP41235 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HNF4AP41235 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HNF4AP41235 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 AC011676.5-201ENST00000624864 2660 ntBASIC16.53■□□□□ 0.24
HNF4AP41235 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.53■□□□□ 0.24
HNF4AP41235 AC005915.1-201ENST00000624912 2018 ntBASIC16.53■□□□□ 0.24
HNF4AP41235 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HNF4AP41235 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.53■□□□□ 0.24
HNF4AP41235 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 AC011270.2-201ENST00000624293 2550 ntBASIC16.53■□□□□ 0.24
HNF4AP41235 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 AC106886.4-201ENST00000623557 2502 ntBASIC16.53■□□□□ 0.24
HNF4AP41235 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HNF4AP41235 FER1L4-210ENST00000615531 5998 ntBASIC16.53■□□□□ 0.24
HNF4AP41235 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.53■□□□□ 0.24
HNF4AP41235 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
HNF4AP41235 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.53■□□□□ 0.24
HNF4AP41235 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
HNF4AP41235 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.53■□□□□ 0.24
HNF4AP41235 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 SCARNA2-201ENST00000458748 420 ntBASIC16.53■□□□□ 0.24
HNF4AP41235 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 AC064862.7-201ENST00000604520 867 ntBASIC16.53■□□□□ 0.24
HNF4AP41235 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.53■□□□□ 0.24
HNF4AP41235 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HNF4AP41235 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.53■□□□□ 0.24
HNF4AP41235 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HNF4AP41235 NCF1C-201ENST00000438382 1427 ntBASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms