Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SHMT2P34897 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.71■□□□□ 0.27
SHMT2P34897 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SHMT2P34897 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SHMT2P34897 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.71■□□□□ 0.27
SHMT2P34897 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.71■□□□□ 0.27
SHMT2P34897 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.71■□□□□ 0.27
SHMT2P34897 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SHMT2P34897 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SHMT2P34897 AL805961.1-202ENST00000641562 540 ntBASIC16.71■□□□□ 0.27
SHMT2P34897 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.71■□□□□ 0.27
SHMT2P34897 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.71■□□□□ 0.27
SHMT2P34897 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.71■□□□□ 0.27
SHMT2P34897 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
SHMT2P34897 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.71■□□□□ 0.27
SHMT2P34897 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHMT2P34897 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
SHMT2P34897 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
SHMT2P34897 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.26
SHMT2P34897 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.26
SHMT2P34897 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.71■□□□□ 0.26
SHMT2P34897 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SHMT2P34897 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.7■□□□□ 0.26
SHMT2P34897 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.7■□□□□ 0.26
SHMT2P34897 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.7■□□□□ 0.26
SHMT2P34897 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SHMT2P34897 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SHMT2P34897 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.7■□□□□ 0.26
SHMT2P34897 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.7■□□□□ 0.26
SHMT2P34897 IGHV3-22-201ENST00000520721 359 ntBASIC16.7■□□□□ 0.26
SHMT2P34897 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.7■□□□□ 0.26
SHMT2P34897 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.7■□□□□ 0.26
SHMT2P34897 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
SHMT2P34897 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.7■□□□□ 0.26
SHMT2P34897 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.26
SHMT2P34897 AC117500.6-201ENST00000624871 588 ntBASIC16.7■□□□□ 0.26
SHMT2P34897 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SHMT2P34897 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.7■□□□□ 0.26
SHMT2P34897 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHMT2P34897 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
SHMT2P34897 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SHMT2P34897 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SHMT2P34897 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
SHMT2P34897 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.69■□□□□ 0.26
SHMT2P34897 AP002414.1-201ENST00000391405 1147 ntBASIC16.69■□□□□ 0.26
SHMT2P34897 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.69■□□□□ 0.26
SHMT2P34897 RPS15P9-201ENST00000494093 319 ntBASIC16.69■□□□□ 0.26
SHMT2P34897 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.69■□□□□ 0.26
SHMT2P34897 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SHMT2P34897 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
SHMT2P34897 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.69■□□□□ 0.26
SHMT2P34897 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SHMT2P34897 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHMT2P34897 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms