Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.91■□□□□ 0.46
BDNFP23560 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.91■□□□□ 0.46
BDNFP23560 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.91■□□□□ 0.46
BDNFP23560 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.91■□□□□ 0.46
BDNFP23560 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.91■□□□□ 0.46
BDNFP23560 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.91■□□□□ 0.46
BDNFP23560 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.91■□□□□ 0.46
BDNFP23560 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.91■□□□□ 0.46
BDNFP23560 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.91■□□□□ 0.46
BDNFP23560 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.91■□□□□ 0.46
BDNFP23560 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.91■□□□□ 0.46
BDNFP23560 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.91■□□□□ 0.46
BDNFP23560 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
BDNFP23560 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
BDNFP23560 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.9■□□□□ 0.46
BDNFP23560 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.9■□□□□ 0.46
BDNFP23560 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
BDNFP23560 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
BDNFP23560 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.9■□□□□ 0.46
BDNFP23560 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.9■□□□□ 0.46
BDNFP23560 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.9■□□□□ 0.46
BDNFP23560 RPS8P6-201ENST00000426177 609 ntBASIC17.9■□□□□ 0.46
BDNFP23560 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.9■□□□□ 0.46
BDNFP23560 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.9■□□□□ 0.46
BDNFP23560 MIR4469-201ENST00000583919 79 ntBASIC17.9■□□□□ 0.46
BDNFP23560 AC068137.2-201ENST00000605408 478 ntBASIC17.9■□□□□ 0.46
BDNFP23560 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.9■□□□□ 0.46
BDNFP23560 AC134684.3-201ENST00000641758 218 ntBASIC17.9■□□□□ 0.46
BDNFP23560 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
BDNFP23560 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.9■□□□□ 0.46
BDNFP23560 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.9■□□□□ 0.46
BDNFP23560 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
BDNFP23560 PKD1P1-201ENST00000458669 6805 ntBASIC17.9■□□□□ 0.46
BDNFP23560 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 TOP3BP1-201ENST00000420768 1380 ntBASIC17.9■□□□□ 0.46
BDNFP23560 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BDNFP23560 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
BDNFP23560 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
BDNFP23560 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
BDNFP23560 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
BDNFP23560 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.89■□□□□ 0.46
BDNFP23560 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
BDNFP23560 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.89■□□□□ 0.45
BDNFP23560 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.89■□□□□ 0.45
BDNFP23560 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
BDNFP23560 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.89■□□□□ 0.45
BDNFP23560 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 FAM58CP-201ENST00000435741 640 ntBASIC17.89■□□□□ 0.45
BDNFP23560 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
BDNFP23560 AC005412.3-201ENST00000580309 715 ntBASIC17.89■□□□□ 0.45
BDNFP23560 MIR4515-201ENST00000584082 81 ntBASIC17.89■□□□□ 0.45
BDNFP23560 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 AC091812.2-201ENST00000619081 385 ntBASIC17.89■□□□□ 0.45
BDNFP23560 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
BDNFP23560 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
BDNFP23560 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.89■□□□□ 0.45
BDNFP23560 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BDNFP23560 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
BDNFP23560 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms