Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.47□□□□□ -0.09
USF1P22415 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
USF1P22415 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.47□□□□□ -0.09
USF1P22415 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
USF1P22415 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
USF1P22415 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.47□□□□□ -0.09
USF1P22415 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC14.47□□□□□ -0.09
USF1P22415 AC012317.2-201ENST00000623305 2251 ntBASIC14.46□□□□□ -0.09
USF1P22415 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
USF1P22415 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC14.46□□□□□ -0.09
USF1P22415 AC100803.2-201ENST00000562459 1963 ntBASIC14.46□□□□□ -0.09
USF1P22415 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC14.46□□□□□ -0.09
USF1P22415 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
USF1P22415 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
USF1P22415 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
USF1P22415 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 IGLL3P-201ENST00000412472 434 ntBASIC14.46□□□□□ -0.09
USF1P22415 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.46□□□□□ -0.09
USF1P22415 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC14.46□□□□□ -0.09
USF1P22415 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.46□□□□□ -0.09
USF1P22415 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC14.46□□□□□ -0.09
USF1P22415 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.46□□□□□ -0.09
USF1P22415 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.46□□□□□ -0.09
USF1P22415 AC010507.1-201ENST00000633895 436 ntBASIC14.46□□□□□ -0.09
USF1P22415 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
USF1P22415 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
USF1P22415 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.46□□□□□ -0.09
USF1P22415 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
USF1P22415 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
USF1P22415 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
USF1P22415 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
USF1P22415 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC14.46□□□□□ -0.1
USF1P22415 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
USF1P22415 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
USF1P22415 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
USF1P22415 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
USF1P22415 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC14.46□□□□□ -0.1
USF1P22415 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
USF1P22415 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
USF1P22415 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.46□□□□□ -0.1
USF1P22415 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
USF1P22415 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.45□□□□□ -0.1
USF1P22415 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
USF1P22415 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.45□□□□□ -0.1
USF1P22415 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.45□□□□□ -0.1
USF1P22415 ACTG1P14-201ENST00000446382 1122 ntBASIC14.45□□□□□ -0.1
USF1P22415 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.45□□□□□ -0.1
USF1P22415 KRT19P2-202ENST00000557173 1012 ntBASIC14.45□□□□□ -0.1
USF1P22415 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.45□□□□□ -0.1
USF1P22415 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC14.45□□□□□ -0.1
USF1P22415 AP002472.1-201ENST00000577490 586 ntBASIC14.45□□□□□ -0.1
USF1P22415 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.45□□□□□ -0.1
USF1P22415 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.45□□□□□ -0.1
USF1P22415 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
USF1P22415 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC14.45□□□□□ -0.1
USF1P22415 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.45□□□□□ -0.1
USF1P22415 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.45□□□□□ -0.1
USF1P22415 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USF1P22415 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.45□□□□□ -0.1
USF1P22415 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.45□□□□□ -0.1
USF1P22415 AC099398.1-201ENST00000567919 2776 ntBASIC14.45□□□□□ -0.1
USF1P22415 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
USF1P22415 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms