Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CLDN3O15551 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CLDN3O15551 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.59■□□□□ 0.57
CLDN3O15551 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.59■□□□□ 0.57
CLDN3O15551 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.59■□□□□ 0.57
CLDN3O15551 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
CLDN3O15551 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
CLDN3O15551 AC092053.1-201ENST00000605787 1936 ntBASIC18.59■□□□□ 0.57
CLDN3O15551 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.59■□□□□ 0.57
CLDN3O15551 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.59■□□□□ 0.57
CLDN3O15551 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CLDN3O15551 IGLL3P-201ENST00000412472 434 ntBASIC18.59■□□□□ 0.57
CLDN3O15551 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 KRT18P2-201ENST00000447938 1258 ntBASIC18.59■□□□□ 0.57
CLDN3O15551 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.59■□□□□ 0.57
CLDN3O15551 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.59■□□□□ 0.57
CLDN3O15551 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
CLDN3O15551 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.59■□□□□ 0.57
CLDN3O15551 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CLDN3O15551 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.59■□□□□ 0.57
CLDN3O15551 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CLDN3O15551 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLDN3O15551 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.58■□□□□ 0.57
CLDN3O15551 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLDN3O15551 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CLDN3O15551 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CLDN3O15551 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLDN3O15551 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLDN3O15551 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.57
CLDN3O15551 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLDN3O15551 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLDN3O15551 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLDN3O15551 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLDN3O15551 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
CLDN3O15551 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 PGAM5P1-201ENST00000518923 814 ntBASIC18.58■□□□□ 0.56
CLDN3O15551 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.58■□□□□ 0.56
CLDN3O15551 AC124947.2-201ENST00000547118 1133 ntBASIC18.58■□□□□ 0.56
CLDN3O15551 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.58■□□□□ 0.56
CLDN3O15551 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.58■□□□□ 0.56
CLDN3O15551 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.58■□□□□ 0.56
CLDN3O15551 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.58■□□□□ 0.56
CLDN3O15551 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
CLDN3O15551 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.58■□□□□ 0.56
CLDN3O15551 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.58■□□□□ 0.56
CLDN3O15551 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLDN3O15551 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CLDN3O15551 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.57■□□□□ 0.56
CLDN3O15551 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CLDN3O15551 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.57■□□□□ 0.56
CLDN3O15551 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.57■□□□□ 0.56
CLDN3O15551 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.57■□□□□ 0.56
CLDN3O15551 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.57■□□□□ 0.56
CLDN3O15551 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.57■□□□□ 0.56
CLDN3O15551 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.57■□□□□ 0.56
CLDN3O15551 CXCL1P1-201ENST00000502804 216 ntBASIC18.57■□□□□ 0.56
CLDN3O15551 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.57■□□□□ 0.56
CLDN3O15551 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.57■□□□□ 0.56
CLDN3O15551 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.57■□□□□ 0.56
CLDN3O15551 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.57■□□□□ 0.56
CLDN3O15551 AC096734.2-201ENST00000562054 433 ntBASIC18.57■□□□□ 0.56
CLDN3O15551 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.57■□□□□ 0.56
CLDN3O15551 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.57■□□□□ 0.56
CLDN3O15551 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
CLDN3O15551 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 AD000864.1-201ENST00000624076 2295 ntBASIC18.57■□□□□ 0.56
CLDN3O15551 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLDN3O15551 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms