Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
MSH4O15457 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 RPSAP43-201ENST00000402237 625 ntBASIC19.04■□□□□ 0.64
MSH4O15457 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.04■□□□□ 0.64
MSH4O15457 GPX1P2-201ENST00000429271 606 ntBASIC19.04■□□□□ 0.64
MSH4O15457 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 AC112482.1-201ENST00000492080 688 ntBASIC19.04■□□□□ 0.64
MSH4O15457 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.04■□□□□ 0.64
MSH4O15457 AL031432.2-201ENST00000566714 459 ntBASIC19.04■□□□□ 0.64
MSH4O15457 AL928711.1-201ENST00000570165 459 ntBASIC19.04■□□□□ 0.64
MSH4O15457 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.04■□□□□ 0.64
MSH4O15457 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.04■□□□□ 0.64
MSH4O15457 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSH4O15457 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
MSH4O15457 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.03■□□□□ 0.64
MSH4O15457 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.03■□□□□ 0.64
MSH4O15457 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.03■□□□□ 0.64
MSH4O15457 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
MSH4O15457 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
MSH4O15457 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.03■□□□□ 0.64
MSH4O15457 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 HCG4-201ENST00000418983 998 ntBASIC19.03■□□□□ 0.64
MSH4O15457 UPF3AP3-201ENST00000420996 769 ntBASIC19.03■□□□□ 0.64
MSH4O15457 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.03■□□□□ 0.64
MSH4O15457 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.03■□□□□ 0.64
MSH4O15457 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.03■□□□□ 0.64
MSH4O15457 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
MSH4O15457 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
MSH4O15457 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
MSH4O15457 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH4O15457 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
MSH4O15457 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH4O15457 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH4O15457 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH4O15457 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.02■□□□□ 0.64
MSH4O15457 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH4O15457 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH4O15457 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH4O15457 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.02■□□□□ 0.64
MSH4O15457 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
MSH4O15457 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.02■□□□□ 0.64
MSH4O15457 DNAJB3-201ENST00000446806 729 ntBASIC19.02■□□□□ 0.64
MSH4O15457 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
MSH4O15457 ALG1L5P-201ENST00000482043 771 ntBASIC19.02■□□□□ 0.64
MSH4O15457 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
MSH4O15457 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
MSH4O15457 AP002472.1-201ENST00000577490 586 ntBASIC19.02■□□□□ 0.64
MSH4O15457 AC068137.2-201ENST00000605408 478 ntBASIC19.02■□□□□ 0.64
MSH4O15457 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH4O15457 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSH4O15457 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.63
MSH4O15457 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.02■□□□□ 0.63
MSH4O15457 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
MSH4O15457 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
MSH4O15457 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 AC005915.1-201ENST00000624912 2018 ntBASIC19.01■□□□□ 0.63
MSH4O15457 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
MSH4O15457 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
MSH4O15457 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
MSH4O15457 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.01■□□□□ 0.63
MSH4O15457 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.01■□□□□ 0.63
MSH4O15457 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.01■□□□□ 0.63
MSH4O15457 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.01■□□□□ 0.63
MSH4O15457 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
MSH4O15457 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.01■□□□□ 0.63
MSH4O15457 AL078644.1-201ENST00000609881 752 ntBASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms