Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
HMGB3O15347 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
HMGB3O15347 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.76□□□□□ -0.21
HMGB3O15347 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
HMGB3O15347 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC13.76□□□□□ -0.21
HMGB3O15347 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC13.76□□□□□ -0.21
HMGB3O15347 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
HMGB3O15347 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC13.76□□□□□ -0.21
HMGB3O15347 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC13.76□□□□□ -0.21
HMGB3O15347 RNF121-214ENST00000533380 870 ntTSL 3 BASIC13.76□□□□□ -0.21
HMGB3O15347 MMAB-206ENST00000540016 945 ntTSL 3 BASIC13.76□□□□□ -0.21
HMGB3O15347 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.76□□□□□ -0.21
HMGB3O15347 CR769767.2-201ENST00000622735 460 ntBASIC13.76□□□□□ -0.21
HMGB3O15347 AC112497.1-201ENST00000624824 639 ntBASIC13.76□□□□□ -0.21
HMGB3O15347 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 AL513477.1-201ENST00000602865 2407 ntBASIC13.76□□□□□ -0.21
HMGB3O15347 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
HMGB3O15347 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC13.76□□□□□ -0.21
HMGB3O15347 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.76□□□□□ -0.21
HMGB3O15347 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.76□□□□□ -0.21
HMGB3O15347 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
HMGB3O15347 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
HMGB3O15347 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.75□□□□□ -0.21
HMGB3O15347 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.75□□□□□ -0.21
HMGB3O15347 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC13.75□□□□□ -0.21
HMGB3O15347 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
HMGB3O15347 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC13.75□□□□□ -0.21
HMGB3O15347 FAM197Y1-201ENST00000421178 764 ntBASIC13.75□□□□□ -0.21
HMGB3O15347 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC13.75□□□□□ -0.21
HMGB3O15347 AC097488.1-201ENST00000507834 756 ntBASIC13.75□□□□□ -0.21
HMGB3O15347 KLF13-207ENST00000560473 489 ntTSL 3 BASIC13.75□□□□□ -0.21
HMGB3O15347 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC13.75□□□□□ -0.21
HMGB3O15347 AC104771.1-201ENST00000603335 964 ntBASIC13.75□□□□□ -0.21
HMGB3O15347 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.75□□□□□ -0.21
HMGB3O15347 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC13.75□□□□□ -0.21
HMGB3O15347 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC13.75□□□□□ -0.21
HMGB3O15347 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
HMGB3O15347 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC13.74□□□□□ -0.21
HMGB3O15347 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 EBF2-203ENST00000520164 5145 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
HMGB3O15347 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 DDX43P3-201ENST00000441064 443 ntBASIC13.74□□□□□ -0.21
HMGB3O15347 CA15P1-201ENST00000481698 905 ntBASIC13.74□□□□□ -0.21
HMGB3O15347 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms