Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TRIM38O00635 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM38O00635 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.18■□□□□ 0.34
TRIM38O00635 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TRIM38O00635 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM38O00635 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.18■□□□□ 0.34
TRIM38O00635 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM38O00635 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM38O00635 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM38O00635 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM38O00635 AL589182.2-201ENST00000619332 1049 ntBASIC17.18■□□□□ 0.34
TRIM38O00635 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM38O00635 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM38O00635 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM38O00635 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM38O00635 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM38O00635 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
TRIM38O00635 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM38O00635 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TRIM38O00635 AC022898.2-201ENST00000616822 1312 ntBASIC17.18■□□□□ 0.34
TRIM38O00635 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM38O00635 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
TRIM38O00635 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM38O00635 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
TRIM38O00635 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM38O00635 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
TRIM38O00635 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.17■□□□□ 0.34
TRIM38O00635 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TRIM38O00635 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM38O00635 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TRIM38O00635 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
TRIM38O00635 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM38O00635 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM38O00635 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.17■□□□□ 0.34
TRIM38O00635 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
TRIM38O00635 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TRIM38O00635 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM38O00635 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.17■□□□□ 0.34
TRIM38O00635 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM38O00635 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.17■□□□□ 0.34
TRIM38O00635 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM38O00635 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.17■□□□□ 0.34
TRIM38O00635 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.17■□□□□ 0.34
TRIM38O00635 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TRIM38O00635 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM38O00635 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.16■□□□□ 0.34
TRIM38O00635 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.16■□□□□ 0.34
TRIM38O00635 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM38O00635 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.16■□□□□ 0.34
TRIM38O00635 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TRIM38O00635 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.16■□□□□ 0.34
TRIM38O00635 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM38O00635 AL020989.1-201ENST00000422979 469 ntBASIC17.16■□□□□ 0.34
TRIM38O00635 PMS2P2-201ENST00000425039 1128 ntBASIC17.16■□□□□ 0.34
TRIM38O00635 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM38O00635 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM38O00635 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM38O00635 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM38O00635 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
TRIM38O00635 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM38O00635 MTDHP5-201ENST00000598980 586 ntBASIC17.16■□□□□ 0.34
TRIM38O00635 AC004706.3-202ENST00000621574 984 ntBASIC17.16■□□□□ 0.34
TRIM38O00635 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.16■□□□□ 0.34
TRIM38O00635 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.16■□□□□ 0.34
TRIM38O00635 AC079781.4-201ENST00000641908 219 ntBASIC17.16■□□□□ 0.34
TRIM38O00635 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 AC132938.5-201ENST00000624980 1813 ntBASIC17.16■□□□□ 0.34
TRIM38O00635 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TRIM38O00635 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM38O00635 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TRIM38O00635 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRIM38O00635 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM38O00635 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms