Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 HNRNPDP1-201ENST00000439535 754 ntBASIC15.31■□□□□ 0.04
USB1Q9BQ65 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 STK19B-204ENST00000512515 211 ntBASIC15.31■□□□□ 0.04
USB1Q9BQ65 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 AC109462.3-201ENST00000573934 613 ntBASIC15.31■□□□□ 0.04
USB1Q9BQ65 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 AC019129.2-201ENST00000609837 1235 ntBASIC15.31■□□□□ 0.04
USB1Q9BQ65 BNIP3P41-202ENST00000616656 861 ntBASIC15.31■□□□□ 0.04
USB1Q9BQ65 AC116407.3-201ENST00000623905 1129 ntBASIC15.31■□□□□ 0.04
USB1Q9BQ65 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.31■□□□□ 0.04
USB1Q9BQ65 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 PCDH8P1-201ENST00000428983 2773 ntBASIC15.31■□□□□ 0.04
USB1Q9BQ65 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 AC009949.1-201ENST00000623048 1830 ntBASIC15.31■□□□□ 0.04
USB1Q9BQ65 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
USB1Q9BQ65 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.31■□□□□ 0.04
USB1Q9BQ65 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 AC145285.3-201ENST00000564603 959 ntBASIC15.3■□□□□ 0.04
USB1Q9BQ65 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 AC106730.1-201ENST00000566722 1090 ntBASIC15.3■□□□□ 0.04
USB1Q9BQ65 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 LINC01451-201ENST00000623792 534 ntBASIC15.3■□□□□ 0.04
USB1Q9BQ65 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USB1Q9BQ65 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.3■□□□□ 0.04
USB1Q9BQ65 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms