Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 AC105233.2-201ENST00000523697 349 ntBASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 AF228730.5-201ENST00000530288 346 ntBASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 BANF1P1-201ENST00000553684 263 ntBASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 NOP2-211ENST00000540228 668 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 NOC2LP2-201ENST00000407594 1944 ntBASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC88AQ3V6T2 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 AC116353.5-201ENST00000638148 1699 ntBASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 FAM86MP-201ENST00000340703 885 ntBASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC88AQ3V6T2 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 AC003101.2-201ENST00000612557 442 ntBASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.58■□□□□ 0.89
CCDC88AQ3V6T2 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms