Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 AC096633.1-201ENST00000422446 749 ntBASIC13.12□□□□□ -0.31
HIST1H1AQ02539 SPDYE13P-201ENST00000445314 798 ntBASIC13.12□□□□□ -0.31
HIST1H1AQ02539 CNP-204ENST00000472031 1019 ntTSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 AL139327.4-201ENST00000612362 153 ntBASIC13.12□□□□□ -0.31
HIST1H1AQ02539 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC13.12□□□□□ -0.31
HIST1H1AQ02539 AC124864.1-201ENST00000623408 392 ntBASIC13.12□□□□□ -0.31
HIST1H1AQ02539 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 LINC02199-201ENST00000506655 2702 ntBASIC13.12□□□□□ -0.31
HIST1H1AQ02539 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HIST1H1AQ02539 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 FRMD6-AS1-201ENST00000617151 2229 ntBASIC13.11□□□□□ -0.31
HIST1H1AQ02539 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 RCN1P1-201ENST00000400413 996 ntBASIC13.11□□□□□ -0.31
HIST1H1AQ02539 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 DAP-202ENST00000432074 1048 ntTSL 2 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 AC002558.1-201ENST00000488906 803 ntBASIC13.11□□□□□ -0.31
HIST1H1AQ02539 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 IGHV3-52-201ENST00000519770 353 ntBASIC13.11□□□□□ -0.31
HIST1H1AQ02539 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 AL592071.1-201ENST00000611956 408 ntBASIC13.11□□□□□ -0.31
HIST1H1AQ02539 IGHV3-41-201ENST00000613121 348 ntBASIC13.11□□□□□ -0.31
HIST1H1AQ02539 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.11□□□□□ -0.31
HIST1H1AQ02539 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 AC010460.3-201ENST00000511359 1579 ntBASIC13.11□□□□□ -0.31
HIST1H1AQ02539 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HIST1H1AQ02539 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIST1H1AQ02539 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIST1H1AQ02539 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIST1H1AQ02539 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIST1H1AQ02539 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.1□□□□□ -0.31
HIST1H1AQ02539 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms