Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
RNF4P78317 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
RNF4P78317 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.77■□□□□ 0.12
RNF4P78317 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.77■□□□□ 0.12
RNF4P78317 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.77■□□□□ 0.12
RNF4P78317 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.77■□□□□ 0.12
RNF4P78317 PGAM5P1-201ENST00000518923 814 ntBASIC15.77■□□□□ 0.12
RNF4P78317 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.77■□□□□ 0.12
RNF4P78317 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.77■□□□□ 0.12
RNF4P78317 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.77■□□□□ 0.12
RNF4P78317 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.77■□□□□ 0.12
RNF4P78317 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.77■□□□□ 0.12
RNF4P78317 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RNF4P78317 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.77■□□□□ 0.11
RNF4P78317 AC108860.2-201ENST00000562760 2183 ntBASIC15.77■□□□□ 0.11
RNF4P78317 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF4P78317 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.77■□□□□ 0.11
RNF4P78317 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF4P78317 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RNF4P78317 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RNF4P78317 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.77■□□□□ 0.11
RNF4P78317 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.77■□□□□ 0.11
RNF4P78317 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.77■□□□□ 0.11
RNF4P78317 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.77■□□□□ 0.11
RNF4P78317 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
RNF4P78317 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.77■□□□□ 0.11
RNF4P78317 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 AC092053.1-201ENST00000605787 1936 ntBASIC15.76■□□□□ 0.11
RNF4P78317 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC15.76■□□□□ 0.11
RNF4P78317 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF4P78317 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 NFIC-211ENST00000641145 8399 ntBASIC15.76■□□□□ 0.11
RNF4P78317 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.76■□□□□ 0.11
RNF4P78317 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.76■□□□□ 0.11
RNF4P78317 CXCL1P1-201ENST00000502804 216 ntBASIC15.76■□□□□ 0.11
RNF4P78317 AC124947.2-201ENST00000547118 1133 ntBASIC15.76■□□□□ 0.11
RNF4P78317 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.76■□□□□ 0.11
RNF4P78317 AC096734.2-201ENST00000562054 433 ntBASIC15.76■□□□□ 0.11
RNF4P78317 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF4P78317 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.76■□□□□ 0.11
RNF4P78317 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.76■□□□□ 0.11
RNF4P78317 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
RNF4P78317 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF4P78317 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.76■□□□□ 0.11
RNF4P78317 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF4P78317 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.76■□□□□ 0.11
RNF4P78317 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF4P78317 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF4P78317 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF4P78317 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms