Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.27■□□□□ 0.52
VCPP55072 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VCPP55072 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.27■□□□□ 0.52
VCPP55072 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VCPP55072 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.27■□□□□ 0.52
VCPP55072 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.27■□□□□ 0.52
VCPP55072 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.27■□□□□ 0.52
VCPP55072 MKNK2P1-201ENST00000437526 628 ntBASIC18.27■□□□□ 0.52
VCPP55072 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
VCPP55072 BX005266.1-201ENST00000473402 457 ntBASIC18.27■□□□□ 0.52
VCPP55072 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.27■□□□□ 0.52
VCPP55072 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.27■□□□□ 0.52
VCPP55072 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.27■□□□□ 0.52
VCPP55072 AC018845.2-201ENST00000568326 409 ntBASIC18.27■□□□□ 0.52
VCPP55072 MIR4745-201ENST00000577608 62 ntBASIC18.27■□□□□ 0.52
VCPP55072 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VCPP55072 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.27■□□□□ 0.52
VCPP55072 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.27■□□□□ 0.52
VCPP55072 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.27■□□□□ 0.52
VCPP55072 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
VCPP55072 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
VCPP55072 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VCPP55072 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.27■□□□□ 0.51
VCPP55072 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
VCPP55072 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.27■□□□□ 0.51
VCPP55072 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
VCPP55072 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
VCPP55072 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
VCPP55072 AC073621.1-201ENST00000392730 636 ntBASIC18.26■□□□□ 0.51
VCPP55072 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
VCPP55072 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.26■□□□□ 0.51
VCPP55072 PRSS29P-201ENST00000440800 595 ntBASIC18.26■□□□□ 0.51
VCPP55072 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.26■□□□□ 0.51
VCPP55072 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.26■□□□□ 0.51
VCPP55072 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.26■□□□□ 0.51
VCPP55072 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.26■□□□□ 0.51
VCPP55072 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.26■□□□□ 0.51
VCPP55072 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.26■□□□□ 0.51
VCPP55072 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VCPP55072 AF228730.6-201ENST00000641497 218 ntBASIC18.26■□□□□ 0.51
VCPP55072 AC084121.3-201ENST00000641716 218 ntBASIC18.26■□□□□ 0.51
VCPP55072 AC105233.6-201ENST00000642093 218 ntBASIC18.26■□□□□ 0.51
VCPP55072 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
VCPP55072 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
VCPP55072 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.26■□□□□ 0.51
VCPP55072 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.26■□□□□ 0.51
VCPP55072 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.26■□□□□ 0.51
VCPP55072 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.26■□□□□ 0.51
VCPP55072 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
VCPP55072 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VCPP55072 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VCPP55072 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCPP55072 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
VCPP55072 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.26■□□□□ 0.51
VCPP55072 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.25■□□□□ 0.51
VCPP55072 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
VCPP55072 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.25■□□□□ 0.51
VCPP55072 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
VCPP55072 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VCPP55072 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 AL121761.2-201ENST00000598007 1648 ntBASIC18.25■□□□□ 0.51
VCPP55072 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.25■□□□□ 0.51
VCPP55072 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.25■□□□□ 0.51
VCPP55072 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VCPP55072 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.25■□□□□ 0.51
VCPP55072 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.25■□□□□ 0.51
VCPP55072 PGM5P2-202ENST00000637225 1043 ntBASIC18.25■□□□□ 0.51
VCPP55072 AP000867.4-201ENST00000641616 219 ntBASIC18.25■□□□□ 0.51
VCPP55072 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCPP55072 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms