Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CSB-PGBD3P0DP91 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
CSB-PGBD3P0DP91 AP001350.2-201ENST00000625104 1094 ntBASIC22.44■■□□□ 1.18
CSB-PGBD3P0DP91 AC025048.6-201ENST00000634326 1161 ntBASIC22.44■■□□□ 1.18
CSB-PGBD3P0DP91 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CSB-PGBD3P0DP91 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC22.44■■□□□ 1.18
CSB-PGBD3P0DP91 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
CSB-PGBD3P0DP91 NME9-203ENST00000383180 2133 ntTSL 2 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 AC004408.2-201ENST00000623613 2777 ntBASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 TOP3BP1-201ENST00000420768 1380 ntBASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 NKG7-205ENST00000600427 520 ntTSL 3 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 AC003101.2-201ENST00000612557 442 ntBASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 AL590560.3-201ENST00000623350 461 ntBASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 ABALON-201ENST00000629058 1903 ntBASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CSB-PGBD3P0DP91 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 AC004233.3-201ENST00000607794 1269 ntBASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 HARS-204ENST00000438307 1789 ntTSL 2 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CSB-PGBD3P0DP91 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 HR-201ENST00000312841 5351 ntTSL 5 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 AL355312.1-201ENST00000407115 2176 ntBASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 AC007274.1-201ENST00000439805 662 ntBASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 COQ6-210ENST00000554920 649 ntTSL 3 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 MIR3909-201ENST00000579518 119 ntBASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 AC018529.1-201ENST00000613063 361 ntBASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC22.41■■□□□ 1.18
CSB-PGBD3P0DP91 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CSB-PGBD3P0DP91 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CSB-PGBD3P0DP91 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC22.4■■□□□ 1.18
CSB-PGBD3P0DP91 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
CSB-PGBD3P0DP91 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CSB-PGBD3P0DP91 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CSB-PGBD3P0DP91 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CSB-PGBD3P0DP91 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CSB-PGBD3P0DP91 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms