Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 AC004832.2-201ENST00000426397 482 ntBASIC18.18■□□□□ 0.5
SIX4Q9UIU6 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 PDPK2P-202ENST00000562415 1191 ntBASIC18.18■□□□□ 0.5
SIX4Q9UIU6 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 MIR4492-201ENST00000581627 80 ntBASIC18.18■□□□□ 0.5
SIX4Q9UIU6 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 AL353732.1-201ENST00000569618 1459 ntBASIC18.18■□□□□ 0.5
SIX4Q9UIU6 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SIX4Q9UIU6 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 AC005915.1-201ENST00000624912 2018 ntBASIC18.17■□□□□ 0.5
SIX4Q9UIU6 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 YBX2P1-201ENST00000394192 760 ntBASIC18.17■□□□□ 0.5
SIX4Q9UIU6 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 AC002347.1-201ENST00000569543 541 ntBASIC18.17■□□□□ 0.5
SIX4Q9UIU6 AC091167.2-201ENST00000579581 588 ntBASIC18.17■□□□□ 0.5
SIX4Q9UIU6 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 AC023511.2-201ENST00000618803 211 ntBASIC18.17■□□□□ 0.5
SIX4Q9UIU6 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 AC007064.4-201ENST00000637740 555 ntBASIC18.17■□□□□ 0.5
SIX4Q9UIU6 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SIX4Q9UIU6 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 MIR4515-201ENST00000584082 81 ntBASIC18.16■□□□□ 0.5
SIX4Q9UIU6 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.16■□□□□ 0.5
SIX4Q9UIU6 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms