Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.91■□□□□ 0.62
HPS3Q969F9 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HPS3Q969F9 PTCHD3P3-201ENST00000403073 906 ntBASIC18.91■□□□□ 0.62
HPS3Q969F9 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.91■□□□□ 0.62
HPS3Q969F9 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HPS3Q969F9 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 AC012640.2-201ENST00000561606 901 ntBASIC18.91■□□□□ 0.62
HPS3Q969F9 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.91■□□□□ 0.62
HPS3Q969F9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
HPS3Q969F9 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.91■□□□□ 0.62
HPS3Q969F9 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.91■□□□□ 0.62
HPS3Q969F9 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HPS3Q969F9 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.91■□□□□ 0.62
HPS3Q969F9 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.9■□□□□ 0.62
HPS3Q969F9 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 AC124067.4-201ENST00000519691 2379 ntBASIC18.9■□□□□ 0.62
HPS3Q969F9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.9■□□□□ 0.62
HPS3Q969F9 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HPS3Q969F9 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
HPS3Q969F9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.9■□□□□ 0.62
HPS3Q969F9 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.9■□□□□ 0.62
HPS3Q969F9 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.9■□□□□ 0.62
HPS3Q969F9 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.9■□□□□ 0.62
HPS3Q969F9 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.9■□□□□ 0.62
HPS3Q969F9 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.9■□□□□ 0.62
HPS3Q969F9 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.9■□□□□ 0.62
HPS3Q969F9 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.9■□□□□ 0.62
HPS3Q969F9 KRT126P-201ENST00000549467 1181 ntBASIC18.9■□□□□ 0.62
HPS3Q969F9 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.9■□□□□ 0.62
HPS3Q969F9 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.9■□□□□ 0.62
HPS3Q969F9 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
HPS3Q969F9 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.9■□□□□ 0.62
HPS3Q969F9 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HPS3Q969F9 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HPS3Q969F9 AC107918.4-202ENST00000641623 219 ntBASIC18.9■□□□□ 0.62
HPS3Q969F9 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HPS3Q969F9 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HPS3Q969F9 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.9■□□□□ 0.62
HPS3Q969F9 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.9■□□□□ 0.62
HPS3Q969F9 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.9■□□□□ 0.62
HPS3Q969F9 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HPS3Q969F9 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
HPS3Q969F9 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.9■□□□□ 0.62
HPS3Q969F9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HPS3Q969F9 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
HPS3Q969F9 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HPS3Q969F9 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HPS3Q969F9 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HPS3Q969F9 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.89■□□□□ 0.61
HPS3Q969F9 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.89■□□□□ 0.61
HPS3Q969F9 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.89■□□□□ 0.61
HPS3Q969F9 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.89■□□□□ 0.61
HPS3Q969F9 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.89■□□□□ 0.61
HPS3Q969F9 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.89■□□□□ 0.61
HPS3Q969F9 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.89■□□□□ 0.61
HPS3Q969F9 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.89■□□□□ 0.61
HPS3Q969F9 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.89■□□□□ 0.61
HPS3Q969F9 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.89■□□□□ 0.61
HPS3Q969F9 TERC-201ENST00000602385 541 ntBASIC18.89■□□□□ 0.61
HPS3Q969F9 AC104692.2-201ENST00000603054 253 ntBASIC18.89■□□□□ 0.61
HPS3Q969F9 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.89■□□□□ 0.61
HPS3Q969F9 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
HPS3Q969F9 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.89■□□□□ 0.61
HPS3Q969F9 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.89■□□□□ 0.61
HPS3Q969F9 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HPS3Q969F9 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HPS3Q969F9 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
HPS3Q969F9 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HPS3Q969F9 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HPS3Q969F9 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.89■□□□□ 0.61
HPS3Q969F9 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms