Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC22.2■■□□□ 1.14
RTF1Q92541 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RTF1Q92541 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RTF1Q92541 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
RTF1Q92541 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
RTF1Q92541 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC22.2■■□□□ 1.14
RTF1Q92541 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
RTF1Q92541 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC22.2■■□□□ 1.14
RTF1Q92541 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC22.2■■□□□ 1.14
RTF1Q92541 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
RTF1Q92541 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RTF1Q92541 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC22.19■■□□□ 1.14
RTF1Q92541 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
RTF1Q92541 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
RTF1Q92541 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC22.19■■□□□ 1.14
RTF1Q92541 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC22.19■■□□□ 1.14
RTF1Q92541 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC22.19■■□□□ 1.14
RTF1Q92541 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
RTF1Q92541 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 TOP3BP1-201ENST00000420768 1380 ntBASIC22.19■■□□□ 1.14
RTF1Q92541 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC22.19■■□□□ 1.14
RTF1Q92541 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 FRMD8P1-201ENST00000440433 1524 ntBASIC22.19■■□□□ 1.14
RTF1Q92541 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
RTF1Q92541 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
RTF1Q92541 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC22.19■■□□□ 1.14
RTF1Q92541 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC22.19■■□□□ 1.14
RTF1Q92541 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
RTF1Q92541 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
RTF1Q92541 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RTF1Q92541 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC22.18■■□□□ 1.14
RTF1Q92541 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC22.18■■□□□ 1.14
RTF1Q92541 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC22.18■■□□□ 1.14
RTF1Q92541 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 AC012569.1-201ENST00000591191 1524 ntBASIC22.18■■□□□ 1.14
RTF1Q92541 FOS-208ENST00000555686 1496 ntTSL 2 BASIC22.18■■□□□ 1.14
RTF1Q92541 AL353732.1-201ENST00000569618 1459 ntBASIC22.18■■□□□ 1.14
RTF1Q92541 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
RTF1Q92541 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC22.18■■□□□ 1.14
RTF1Q92541 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 AC002056.1-201ENST00000395613 760 ntBASIC22.18■■□□□ 1.14
RTF1Q92541 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC22.18■■□□□ 1.14
RTF1Q92541 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC22.18■■□□□ 1.14
RTF1Q92541 CNN2P11-201ENST00000429351 262 ntBASIC22.18■■□□□ 1.14
RTF1Q92541 AC140658.5-201ENST00000438532 169 ntBASIC22.18■■□□□ 1.14
RTF1Q92541 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC22.18■■□□□ 1.14
RTF1Q92541 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC22.18■■□□□ 1.14
RTF1Q92541 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC22.18■■□□□ 1.14
RTF1Q92541 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC22.18■■□□□ 1.14
RTF1Q92541 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC22.18■■□□□ 1.14
RTF1Q92541 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC22.18■■□□□ 1.14
RTF1Q92541 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
RTF1Q92541 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
RTF1Q92541 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC22.18■■□□□ 1.14
RTF1Q92541 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
RTF1Q92541 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
RTF1Q92541 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RTF1Q92541 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC22.17■■□□□ 1.14
RTF1Q92541 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC22.17■■□□□ 1.14
RTF1Q92541 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC22.17■■□□□ 1.14
RTF1Q92541 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC22.17■■□□□ 1.14
RTF1Q92541 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC22.17■■□□□ 1.14
RTF1Q92541 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC22.17■■□□□ 1.14
RTF1Q92541 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC22.17■■□□□ 1.14
RTF1Q92541 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC22.17■■□□□ 1.14
RTF1Q92541 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
RTF1Q92541 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC22.17■■□□□ 1.14
RTF1Q92541 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
RTF1Q92541 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms