Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 AC007389.4-201ENST00000454674 793 ntBASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 AC009949.1-201ENST00000623048 1830 ntBASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC1BQ8NDV3 SLC7A15P-201ENST00000424028 1363 ntBASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 ZNF890P-202ENST00000530367 1156 ntBASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 AL583810.1-201ENST00000553344 1045 ntBASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.08■□□□□ 0.81
SMC1BQ8NDV3 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC1BQ8NDV3 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC1BQ8NDV3 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC1BQ8NDV3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SMC1BQ8NDV3 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC1BQ8NDV3 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
SMC1BQ8NDV3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.08■□□□□ 0.8
SMC1BQ8NDV3 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.08■□□□□ 0.8
SMC1BQ8NDV3 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AC098818.2-201ENST00000564925 2320 ntBASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 BRWD1P1-201ENST00000401091 371 ntBASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AL353705.2-201ENST00000428243 662 ntBASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 GOLGA2P4-201ENST00000441462 777 ntBASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AC105233.2-201ENST00000523697 349 ntBASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AF228730.5-201ENST00000530288 346 ntBASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AC055876.2-201ENST00000531834 546 ntBASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AC008735.3-201ENST00000596646 500 ntBASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AC016027.1-202ENST00000607927 1699 ntBASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.07■□□□□ 0.8
SMC1BQ8NDV3 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms