Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 AC097376.2-205ENST00000610159 5334 ntBASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC28AQ8IWP9 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 OR2A1-AS1-207ENST00000486094 819 ntBASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 AC104771.1-201ENST00000603335 964 ntBASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 AL121906.2-201ENST00000621597 723 ntBASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 AC087386.2-201ENST00000623212 4637 ntBASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 AC023157.3-201ENST00000619086 2088 ntBASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28AQ8IWP9 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 AL355802.2-201ENST00000402069 882 ntBASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 PNMA6B-201ENST00000538162 1200 ntBASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 KRT8P45-201ENST00000414328 1447 ntBASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28AQ8IWP9 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms