Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.27■□□□□ 0.04
H3F3AP84243 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 PI4KAP1-204ENST00000612579 1703 ntBASIC15.27■□□□□ 0.04
H3F3AP84243 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
H3F3AP84243 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.27■□□□□ 0.04
H3F3AP84243 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
H3F3AP84243 AC092910.1-201ENST00000482027 1129 ntBASIC15.27■□□□□ 0.04
H3F3AP84243 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.27■□□□□ 0.04
H3F3AP84243 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.27■□□□□ 0.04
H3F3AP84243 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.27■□□□□ 0.04
H3F3AP84243 AC117500.6-201ENST00000624871 588 ntBASIC15.27■□□□□ 0.04
H3F3AP84243 AC005593.1-201ENST00000624894 515 ntBASIC15.27■□□□□ 0.04
H3F3AP84243 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.27■□□□□ 0.04
H3F3AP84243 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.27■□□□□ 0.03
H3F3AP84243 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
H3F3AP84243 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
H3F3AP84243 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
H3F3AP84243 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
H3F3AP84243 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
H3F3AP84243 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
H3F3AP84243 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
H3F3AP84243 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
H3F3AP84243 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.27■□□□□ 0.03
H3F3AP84243 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
H3F3AP84243 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.26■□□□□ 0.03
H3F3AP84243 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
H3F3AP84243 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.26■□□□□ 0.03
H3F3AP84243 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.26■□□□□ 0.03
H3F3AP84243 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.26■□□□□ 0.03
H3F3AP84243 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.26■□□□□ 0.03
H3F3AP84243 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.26■□□□□ 0.03
H3F3AP84243 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.26■□□□□ 0.03
H3F3AP84243 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.26■□□□□ 0.03
H3F3AP84243 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.26■□□□□ 0.03
H3F3AP84243 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.26■□□□□ 0.03
H3F3AP84243 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
H3F3AP84243 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
H3F3AP84243 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.26■□□□□ 0.03
H3F3AP84243 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
H3F3AP84243 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
H3F3AP84243 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.26■□□□□ 0.03
H3F3AP84243 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
H3F3AP84243 AC092068.3-201ENST00000587894 2016 ntBASIC15.26■□□□□ 0.03
H3F3AP84243 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
H3F3AP84243 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.25■□□□□ 0.03
H3F3AP84243 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.25■□□□□ 0.03
H3F3AP84243 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.25■□□□□ 0.03
H3F3AP84243 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.25■□□□□ 0.03
H3F3AP84243 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.25■□□□□ 0.03
H3F3AP84243 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.25■□□□□ 0.03
H3F3AP84243 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.25■□□□□ 0.03
H3F3AP84243 AC098831.1-202ENST00000438821 336 ntBASIC15.25■□□□□ 0.03
H3F3AP84243 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.25■□□□□ 0.03
H3F3AP84243 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.25■□□□□ 0.03
H3F3AP84243 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.25■□□□□ 0.03
H3F3AP84243 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.25■□□□□ 0.03
H3F3AP84243 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC15.25■□□□□ 0.03
H3F3AP84243 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
H3F3AP84243 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms