Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 AC022211.2-201ENST00000585075 2527 ntBASIC18.3■□□□□ 0.52
VCPP55072 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VCPP55072 AD000864.1-201ENST00000624076 2295 ntBASIC18.3■□□□□ 0.52
VCPP55072 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VCPP55072 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
VCPP55072 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.3■□□□□ 0.52
VCPP55072 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
VCPP55072 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.29■□□□□ 0.52
VCPP55072 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
VCPP55072 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
VCPP55072 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
VCPP55072 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.29■□□□□ 0.52
VCPP55072 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
VCPP55072 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.29■□□□□ 0.52
VCPP55072 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.29■□□□□ 0.52
VCPP55072 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.29■□□□□ 0.52
VCPP55072 TSEN15P1-201ENST00000423257 515 ntBASIC18.29■□□□□ 0.52
VCPP55072 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.29■□□□□ 0.52
VCPP55072 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.29■□□□□ 0.52
VCPP55072 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
VCPP55072 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.29■□□□□ 0.52
VCPP55072 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.29■□□□□ 0.52
VCPP55072 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.29■□□□□ 0.52
VCPP55072 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
VCPP55072 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.29■□□□□ 0.52
VCPP55072 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.29■□□□□ 0.52
VCPP55072 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.29■□□□□ 0.52
VCPP55072 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.29■□□□□ 0.52
VCPP55072 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.29■□□□□ 0.52
VCPP55072 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCPP55072 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.29■□□□□ 0.52
VCPP55072 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.28■□□□□ 0.52
VCPP55072 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.28■□□□□ 0.52
VCPP55072 BX276092.7-203ENST00000637198 1536 ntBASIC18.28■□□□□ 0.52
VCPP55072 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
VCPP55072 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.28■□□□□ 0.52
VCPP55072 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VCPP55072 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 AL139400.1-201ENST00000366220 510 ntBASIC18.28■□□□□ 0.52
VCPP55072 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.28■□□□□ 0.52
VCPP55072 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.28■□□□□ 0.52
VCPP55072 KRT18P27-201ENST00000427733 1299 ntBASIC18.28■□□□□ 0.52
VCPP55072 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.28■□□□□ 0.52
VCPP55072 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC18.28■□□□□ 0.52
VCPP55072 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.28■□□□□ 0.52
VCPP55072 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.28■□□□□ 0.52
VCPP55072 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 AL513190.1-201ENST00000621254 727 ntBASIC18.28■□□□□ 0.52
VCPP55072 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.28■□□□□ 0.52
VCPP55072 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VCPP55072 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.28■□□□□ 0.52
VCPP55072 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VCPP55072 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.28■□□□□ 0.52
VCPP55072 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.28■□□□□ 0.52
VCPP55072 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCPP55072 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
VCPP55072 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.27■□□□□ 0.52
VCPP55072 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCPP55072 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms